Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0652 ATGGGGCAAGAATATGTTAGCATTTGTTCCACAGGTAACCAAGTGGATGATCTTTCAGTTCCTCCAGGTTTTGCATCACTTACATCCTTCACATTGAAGAGGATGGAAGATAGTGAAGAAACCTGTAATTCCATGGCTTTTGGGAGTGCATTTCAACCAGATCCCGCCAATATGGATGCTGCATGTGACCCAATTGATATTGCAGAATTTAAGAGGTCTCTCAGGCATAGACCGTGGATACTATACGACCAATGCGATCACGAAGAAGAGGACTCTGACCCTAAACAGATTGATGCGGTAAGTGCAAGATGGCGTCCAGAAGATGCATGCACAGATATCCTTGAAGAGGCTCCTGTGTTCCACCCAACTGAAGAGGAGTTCAAAGACACGCTTAAGTATATTGCAAGTTTACGTCCAAGAGCAGAGCCATATGGAGTCTGCCGTATAGTCCCTCCTCCTTCCTGGCAACCACCATGCCATATTAAAGAAAAGAATGTATGGACAAGATCTAAATTTCCTACCCAAATTCAACGGATTGATGAGCTTCGAGATCAGTGTTCGAAGAGCAAGTTTTCTATATTTAGTGAAAATATGAACGGAAGAAAGAAAAGAAGCTTCACAATGGGCTCAGAGTTTCAATCGGATAATGGATATATCATAACTCCTGATGAAGCCAGACGCTATGAAACCCAGGGCTTTAAATTTGAACCTGGTCCAGAGTTCACTTTGGAAACTTTTAAGAATTATGCAGATGATTTCAAGGGGCAGTATTTTTGCAAGAAAGATGAGGTCGCAGATTCAGATGTTAATTCAACTGTGTCCCAAAAGCAGTGGGAACCATCATTGGAGAATATTGAGGGTGAATATAGGCGAATTGTTGAGAATCCAACTGAAGAAATTGAGGTGCTTCATGGTGCTGACCTTGAAACTGGAGTTTTTGGAAGCGGATTTCCAAAAGTATCCAATCAGGAGCAGATGTCTGATCATGCACAATATTTTGAATCTGGCTGGAACTTAAATAATACCCCAAAGCTGCCCGGTTCTCTTCTTGCGTTTGAAAACTATGACATATTTCGTATTTTACAGCCTCGGCTACACGTAGGGATGTGCTTTTCATCACTTTGTTGGAAAGTTGAAGAGCACCACTTATACTCGCTGTGCTACATGCATTTGGGTGCACCTAAAATATGGTACAGTATCCCTGGGAGATATCGTCCAAAATTTGAGGCGGCTGTGAAGAAGTATTTTCCATACCTATCAGCAACACAGCCTGAGTTGCTTCCTAAGCTGGTAACCCAACTTTCCCCATCCACATTGAAGTCTGAGGGTATACCTACCTATCGTTGTATCCAGTATCCCAGGGAGTTTGTCCTTATCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGCTTTAATTGCACCGAGGCAGTAAATTTTGCTCCAGTTGACTGGTTACCACATGGGCAGAATACTGTGGAACTCTATTGTTTGCAGGGAAGAAGGACATCAATCTCCCATGACAAGCTGTTGTTTGGTGCAGCTAGGGAAGCTGTGAGGGCCCAGTGGGAAGTATCACTGTTGGGGAAGAGCACTTTGGATCATTTAAGGTGGAAAGAACTGTGTGGCAAGGATGGGATCTTAGCAAGTGCTCTAAAGTCACGTATCAAGTCAGAAGGCAGGAGAAGGGAATATCTTTGCACCTCTTCACAGTCTAGGAAGATGGACAAAGACTTCGATAGTGTCAGAAAGAGGGAATGCTGGACATGTTTCTATGATTTGCACCTGTCTGCAGCATGCTGTCAATGTTCCCCAGACAAATATGCATGTCTGAATCATGCAAAGCAGCTCTGTTCTTGCTCTTGGAGTGCCAAAACTTTCCTCTTCCGTTATGAAATGAGCAAGTTAGATCTCCTTGTTCAAGCCTTGGAAGGGAAATTAAGTTCTGTCTACAGGTGGGCTAGAGAAGATCTTGGGCTGGCTCTGTCTCGTTGTGTCTCAAACGATCAGTTAAAGGCATGTGGGTTTGTTAATAATCCATCCCCTACAGAGTCAAAACAAGAACAAAAATGTCAAGATGAAGTGCTCAAATCTCAAGATGTTGTAGAACCCAATGGCATTATTGAGAATTCTACTAATTGGATTTCAGAGATGAAAACACCAGCTGTGGTCCAAGCCTTAGAAAACCTGAAAAAGAGAGAACATGCAGTAGCATTTGCAATTAGTTCAAGTGGTACTGCAGATGATTCCTATTCAATGCAGAAAGAGAATCCATACATAGTTCCATCTGAAAGTACAAGTTCATCAAGTTTGTCAAGTTCCTCAGAATCTGATGAAGATATATCAGATGGCTTTCTGTTCAGGAAGAAACAATGCCTTTTTTCAGCTTACAATTCAAACTCTCCAGTTTATCATCTCAAAAAAGAAGCCTTGTCGTCTAAGCTCCCAAAAGATGATTCTAGTGAGCATAACATTGCCCAGCGCTTGATTCCAAGTTCCAGAGTTGGTCATTTGACTGATTTGGCTTCTGAGAAACAAATAACAAAAAGACCCCCATCTTGCTGTCGGAGTGATATTATTCTTCTCAGCGACGATGAGGGTGAGGATCCATGTCGGAAACTCTGCTGA 2628 0.425 MGQEYVSICSTGNQVDDLSVPPGFASLTSFTLKRMEDSEETCNSMAFGSAFQPDPANMDAACDPIDIAEFKRSLRHRPWILYDQCDHEEEDSDPKQIDAVSARWRPEDACTDILEEAPVFHPTEEEFKDTLKYIASLRPRAEPYGVCRIVPPPSWQPPCHIKEKNVWTRSKFPTQIQRIDELRDQCSKSKFSIFSENMNGRKKRSFTMGSEFQSDNGYIITPDEARRYETQGFKFEPGPEFTLETFKNYADDFKGQYFCKKDEVADSDVNSTVSQKQWEPSLENIEGEYRRIVENPTEEIEVLHGADLETGVFGSGFPKVSNQEQMSDHAQYFESGWNLNNTPKLPGSLLAFENYDIFRILQPRLHVGMCFSSLCWKVEEHHLYSLCYMHLGAPKIWYSIPGRYRPKFEAAVKKYFPYLSATQPELLPKLVTQLSPSTLKSEGIPTYRCIQYPREFVLIFPGAYHSGFDCGFNCTEAVNFAPVDWLPHGQNTVELYCLQGRRTSISHDKLLFGAAREAVRAQWEVSLLGKSTLDHLRWKELCGKDGILASALKSRIKSEGRRREYLCTSSQSRKMDKDFDSVRKRECWTCFYDLHLSAACCQCSPDKYACLNHAKQLCSCSWSAKTFLFRYEMSKLDLLVQALEGKLSSVYRWAREDLGLALSRCVSNDQLKACGFVNNPSPTESKQEQKCQDEVLKSQDVVEPNGIIENSTNWISEMKTPAVVQALENLKKREHAVAFAISSSGTADDSYSMQKENPYIVPSESTSSSSLSSSSESDEDISDGFLFRKKQCLFSAYNSNSPVYHLKKEALSSKLPKDDSSEHNIAQRLIPSSRVGHLTDLASEKQITKRPPSCCRSDIILLSDDEGEDPCRKLC* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0652 875 Pfam C5HC2 zinc finger 587 637 IPR004198 -
Vvi7g0652 875 ProSiteProfiles JmjN domain profile. 117 158 IPR003349 -
Vvi7g0652 875 SUPERFAMILY Clavaminate synthase-like 220 524 - -
Vvi7g0652 875 SMART JmjN_1 116 157 IPR003349 -
Vvi7g0652 875 Pfam jmjN domain 118 151 IPR003349 -
Vvi7g0652 875 SMART cupin_9 331 497 IPR003347 -
Vvi7g0652 875 Gene3D Cupin 102 481 - -
Vvi7g0652 875 PANTHER LYSINE-SPECIFIC DEMETHYLASE 114 833 - -
Vvi7g0652 875 ProSiteProfiles JmjC domain profile. 331 497 IPR003347 -
Vvi7g0652 875 Pfam JmjC domain, hydroxylase 365 480 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0652 Vvi-Chr7 6484378 6494622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0652 1 672 JUMONJI Transcription Factor Family AT1G08620 52.624 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi7g0652 JmjC 8e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0652 - - vvi:100249688 1779.99