Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g0648 | ATGCCTTCATCTACCATCTTAATCCACATCAAGGGAGGTCAGATGGACACTAAGTCTGTACGATGTCTTATTAACAGCATTTCTCGGTTCATCCATCTGGTTTCATGCCAGACACTGAAACCTATGCCCATTCAAAAGGATTGCAGAAATATGGTCGGCTTATTGAAGCTTTTGAAACCGGTGCTTGATGATGTTGTTAATTGCAAAATACCATCAGATGAAATTCTATTTAAAGAATGCGAAGAGTTGGATATGGCTGTTAATGAGGCTAGGGAGTTTGTGGAGAATTGGTGCCCAAAGATGAGCAAGATTTTCAGTGTTCTACAGAGTGAGCAATTGGTGATGAAAATCCAGAGCTCTTCCCTGGAGATTTGTTTTATATTGTGTAGATTGTTACATTCGTCTCCATCTGTGTCAAATTTAACCAGCATTCAGCACTGTATGCAGAAACTTCAACATTTAGAGCAGAAAAGAATATCAGAATACATAGAACAGGCTCTGAGAAGTCAAAGAGATGAGATAATTCCTCATACTCAACAGCTAGCTAAAATTATTGAGTCCCTTAGTTTGACATCAAAGCAGGAATTGCTGAAAGAGAGTGTGGCTGTGGAAAGGGAGAGAATGAATGCCCAAGTCAATAAAACAGCATATGAATTAGACCAAATCAATCAAATTGTGGAACTCGTCTCCCATATTCGTGATTGCATGGTTAGACTTGGGGGATTTGAAGCTATAAATGGTGTCCGAATACCTTCATATTTCCGCTGCCCATTGTCTTTGGAACTCATGATGGATCCTGTGATTGTGGCATCTGGTCAGACCTATGAGAGGTCTTCCATCCAAAAATGGCTCGATCAAGGGTTGATGATTTGCCCAAAAACCCGTCAAACTCTTGCACATGCAAATCTCATCCCCAATTACACTGTGAAAGCTTTGATAGAGAATTGGTGTGAGGAAAACAATATAACACTTTCTGGGACTTCCGAGCATACTAATATAACCCCAGTTCCATCCCCATTGGATCATGTATCTGCTCAAGATGTCATTGGAATGGATAGTTTCCGTTGTTCCATACACAGTAGCAATTGTACATCAAGATCCTCTTTGGAAGTTGGAAATGGAATTGAGAAATTAAAGGTTGATGTCTCCACCAGATTTGGTGGGGAAGAATCCAATGTATGCAAGAGTAGGGAACCTGAAAAGTTGGAGCGACAATCCCCTGAACAGTCATATATTCACAGCAGGACTGAATCAACCTCAAGTGCTGTTTCCAGTATTGATTCCTTACCTACCGCGTCAACTGAATTGTCAAGGATATCCAATAAACAAGAAAATGGGACAGGGCTGTCTGGAGAAATCACATCGGAGTGTCACGCTTCTCCTTCAAATAGAGATTTGGAATTCTCTCCATGGTTTTCTGGAAAACAATTTCATAGCTCCAAAACAAAAGTGGAAATGGTCAGCAATGGAAAATGTGGCCCCCCGAGAATTCTATCCCTTCCATTTTCCGACCCAAAATTTGATGATTTGACCACCTCTTCCCATGTTGAGAAACTGGTTGAAGATCTAAAGAGTCAATCAAATGAATTGCAAACTGTAGCTGCATCGGAATTGAGGCTTCTGGCAAAGCACAACATGGAGAACCGCATTATTATAGGCCGTTGTGGGGCTATTGCACCATTAGTTTTACTTCTATACTCAGAAGTGAAGCAAACCCAAGAGAATGCCGTCACAGCTCTCTTGAATCTATCCATTAATGATGCAAATAAGGTCATTATTGCAGAAGCTGGAGCTATAGAATCTCTTATCCATGTTCTGAAATCAGGAAATGCTGGAGCCAAAGAAAACTCTGCAGCAACTCTGTTTAGCCTGTCTGTTTTAGAAGAATACAAAGCTAAGATTGGATGTTCTGGTGCAGTTAAAGCCTTGGTGGATCTTCTGGGCTCAGGGACTCTCAGAGGGAAGAAAGATGCTGCTACTGCATTGTTTAACCTATCAATATGCCATGAAAATAAGCCTCGTATAATTCAAGCAGGAGCTGTGAAGTATCTTGTTCAATTGATGGAACCTGCTACAGGAATGGTTGACAAGGCTGTTGCTCTTCTTGCAAACCTGTCAATAATTTCAGAGGGACGCTTTGCAATTGTACGGGAAGGGGGCATTCCCTTGTTGGTTGAGCTTGTCGAAACAGGATCAGTGCGAGGAAAGGAAAATGCTGCCTCCATACTATTGCAACTATGCATTAACAGTCCCAAATTTTGTACCCTGGTTCTGCAAGAAGGAGCCATCCCACCCCTTGTTGCCTTATCTCAGTCTGGCACACCGAGAGCCAAGGAGAAGGCACAGCAGCTTCTCAGTCACTTCAGGAACCAGCGAGAAGGGGCTGCAGCGAAGGGAAAATCATGA | 2406 | 0.4214 | MPSSTILIHIKGGQMDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNGIEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTASTELSRISNKQENGTGLSGEITSECHASPSNRDLEFSPWFSGKQFHSSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS* | 802 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g0648 | 801 | CDD | RING-Ubox_PUB | 251 | 303 | IPR045210 | - | |
Vvi7g0648 | 801 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 324 | IPR013083 | - | |
Vvi7g0648 | 801 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 556 | 598 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | FunFam | RING-type E3 ubiquitin transferase | 247 | 323 | - | - | |
Vvi7g0648 | 801 | FunFam | RING-type E3 ubiquitin transferase | 500 | 794 | - | - | |
Vvi7g0648 | 801 | Pfam | Armadillo/beta-catenin-like repeat | 547 | 584 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | Pfam | Armadillo/beta-catenin-like repeat | 586 | 625 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | Pfam | Armadillo/beta-catenin-like repeat | 637 | 666 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | Pfam | Armadillo/beta-catenin-like repeat | 710 | 747 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | MobiDBLite | consensus disorder prediction | 391 | 410 | - | - | |
Vvi7g0648 | 801 | MobiDBLite | consensus disorder prediction | 411 | 462 | - | - | |
Vvi7g0648 | 801 | Pfam | U-box domain | 250 | 321 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi7g0648 | 801 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 679 | 720 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | ProSiteProfiles | U-box domain profile. | 249 | 323 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi7g0648 | 801 | SMART | arm_5 | 708 | 748 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | SMART | arm_5 | 586 | 626 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | SMART | arm_5 | 627 | 667 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | SMART | arm_5 | 668 | 707 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | SMART | arm_5 | 545 | 585 | IPR000225 | GO:0005515 | |
Vvi7g0648 | 801 | SUPERFAMILY | RING/U-box | 248 | 324 | - | - | |
Vvi7g0648 | 801 | Gene3D | - | 502 | 797 | IPR011989 | - | |
Vvi7g0648 | 801 | PANTHER | U BOX DOMAIN-CONTAINING | 43 | 789 | - | - | |
Vvi7g0648 | 801 | MobiDBLite | consensus disorder prediction | 389 | 462 | - | - | |
Vvi7g0648 | 801 | Coils | Coil | 193 | 213 | - | - | |
Vvi7g0648 | 801 | SMART | Ubox_2 | 253 | 316 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi7g0648 | 801 | SUPERFAMILY | ARM repeat | 507 | 788 | IPR016024 | - | |
Vvi7g0648 | 801 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 638 | 680 | IPR000225 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi7g0648 | Vvi-Chr7 | 6410084 | 6415980 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi7g0648 | 15 | 801 | U-box Gene Family | AT3G54790 | 55.626 | 0.0 | 745 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g0648 | - | - | vvi:100266964 | 1546.95 |