Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0648 ATGCCTTCATCTACCATCTTAATCCACATCAAGGGAGGTCAGATGGACACTAAGTCTGTACGATGTCTTATTAACAGCATTTCTCGGTTCATCCATCTGGTTTCATGCCAGACACTGAAACCTATGCCCATTCAAAAGGATTGCAGAAATATGGTCGGCTTATTGAAGCTTTTGAAACCGGTGCTTGATGATGTTGTTAATTGCAAAATACCATCAGATGAAATTCTATTTAAAGAATGCGAAGAGTTGGATATGGCTGTTAATGAGGCTAGGGAGTTTGTGGAGAATTGGTGCCCAAAGATGAGCAAGATTTTCAGTGTTCTACAGAGTGAGCAATTGGTGATGAAAATCCAGAGCTCTTCCCTGGAGATTTGTTTTATATTGTGTAGATTGTTACATTCGTCTCCATCTGTGTCAAATTTAACCAGCATTCAGCACTGTATGCAGAAACTTCAACATTTAGAGCAGAAAAGAATATCAGAATACATAGAACAGGCTCTGAGAAGTCAAAGAGATGAGATAATTCCTCATACTCAACAGCTAGCTAAAATTATTGAGTCCCTTAGTTTGACATCAAAGCAGGAATTGCTGAAAGAGAGTGTGGCTGTGGAAAGGGAGAGAATGAATGCCCAAGTCAATAAAACAGCATATGAATTAGACCAAATCAATCAAATTGTGGAACTCGTCTCCCATATTCGTGATTGCATGGTTAGACTTGGGGGATTTGAAGCTATAAATGGTGTCCGAATACCTTCATATTTCCGCTGCCCATTGTCTTTGGAACTCATGATGGATCCTGTGATTGTGGCATCTGGTCAGACCTATGAGAGGTCTTCCATCCAAAAATGGCTCGATCAAGGGTTGATGATTTGCCCAAAAACCCGTCAAACTCTTGCACATGCAAATCTCATCCCCAATTACACTGTGAAAGCTTTGATAGAGAATTGGTGTGAGGAAAACAATATAACACTTTCTGGGACTTCCGAGCATACTAATATAACCCCAGTTCCATCCCCATTGGATCATGTATCTGCTCAAGATGTCATTGGAATGGATAGTTTCCGTTGTTCCATACACAGTAGCAATTGTACATCAAGATCCTCTTTGGAAGTTGGAAATGGAATTGAGAAATTAAAGGTTGATGTCTCCACCAGATTTGGTGGGGAAGAATCCAATGTATGCAAGAGTAGGGAACCTGAAAAGTTGGAGCGACAATCCCCTGAACAGTCATATATTCACAGCAGGACTGAATCAACCTCAAGTGCTGTTTCCAGTATTGATTCCTTACCTACCGCGTCAACTGAATTGTCAAGGATATCCAATAAACAAGAAAATGGGACAGGGCTGTCTGGAGAAATCACATCGGAGTGTCACGCTTCTCCTTCAAATAGAGATTTGGAATTCTCTCCATGGTTTTCTGGAAAACAATTTCATAGCTCCAAAACAAAAGTGGAAATGGTCAGCAATGGAAAATGTGGCCCCCCGAGAATTCTATCCCTTCCATTTTCCGACCCAAAATTTGATGATTTGACCACCTCTTCCCATGTTGAGAAACTGGTTGAAGATCTAAAGAGTCAATCAAATGAATTGCAAACTGTAGCTGCATCGGAATTGAGGCTTCTGGCAAAGCACAACATGGAGAACCGCATTATTATAGGCCGTTGTGGGGCTATTGCACCATTAGTTTTACTTCTATACTCAGAAGTGAAGCAAACCCAAGAGAATGCCGTCACAGCTCTCTTGAATCTATCCATTAATGATGCAAATAAGGTCATTATTGCAGAAGCTGGAGCTATAGAATCTCTTATCCATGTTCTGAAATCAGGAAATGCTGGAGCCAAAGAAAACTCTGCAGCAACTCTGTTTAGCCTGTCTGTTTTAGAAGAATACAAAGCTAAGATTGGATGTTCTGGTGCAGTTAAAGCCTTGGTGGATCTTCTGGGCTCAGGGACTCTCAGAGGGAAGAAAGATGCTGCTACTGCATTGTTTAACCTATCAATATGCCATGAAAATAAGCCTCGTATAATTCAAGCAGGAGCTGTGAAGTATCTTGTTCAATTGATGGAACCTGCTACAGGAATGGTTGACAAGGCTGTTGCTCTTCTTGCAAACCTGTCAATAATTTCAGAGGGACGCTTTGCAATTGTACGGGAAGGGGGCATTCCCTTGTTGGTTGAGCTTGTCGAAACAGGATCAGTGCGAGGAAAGGAAAATGCTGCCTCCATACTATTGCAACTATGCATTAACAGTCCCAAATTTTGTACCCTGGTTCTGCAAGAAGGAGCCATCCCACCCCTTGTTGCCTTATCTCAGTCTGGCACACCGAGAGCCAAGGAGAAGGCACAGCAGCTTCTCAGTCACTTCAGGAACCAGCGAGAAGGGGCTGCAGCGAAGGGAAAATCATGA 2406 0.4214 MPSSTILIHIKGGQMDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNGIEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTASTELSRISNKQENGTGLSGEITSECHASPSNRDLEFSPWFSGKQFHSSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0648 801 CDD RING-Ubox_PUB 251 303 IPR045210 -
Vvi7g0648 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 324 IPR013083 -
Vvi7g0648 801 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 598 IPR000225 GO:0005515
Vvi7g0648 801 FunFam RING-type E3 ubiquitin transferase 247 323 - -
Vvi7g0648 801 FunFam RING-type E3 ubiquitin transferase 500 794 - -
Vvi7g0648 801 Pfam Armadillo/beta-catenin-like repeat 547 584 IPR000225 GO:0005515
Vvi7g0648 801 Pfam Armadillo/beta-catenin-like repeat 586 625 IPR000225 GO:0005515
Vvi7g0648 801 Pfam Armadillo/beta-catenin-like repeat 637 666 IPR000225 GO:0005515
Vvi7g0648 801 Pfam Armadillo/beta-catenin-like repeat 710 747 IPR000225 GO:0005515
Vvi7g0648 801 MobiDBLite consensus disorder prediction 391 410 - -
Vvi7g0648 801 MobiDBLite consensus disorder prediction 411 462 - -
Vvi7g0648 801 Pfam U-box domain 250 321 IPR003613 GO:0004842|GO:0016567
Vvi7g0648 801 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 679 720 IPR000225 GO:0005515
Vvi7g0648 801 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842|GO:0016567
Vvi7g0648 801 SMART arm_5 708 748 IPR000225 GO:0005515
Vvi7g0648 801 SMART arm_5 586 626 IPR000225 GO:0005515
Vvi7g0648 801 SMART arm_5 627 667 IPR000225 GO:0005515
Vvi7g0648 801 SMART arm_5 668 707 IPR000225 GO:0005515
Vvi7g0648 801 SMART arm_5 545 585 IPR000225 GO:0005515
Vvi7g0648 801 SUPERFAMILY RING/U-box 248 324 - -
Vvi7g0648 801 Gene3D - 502 797 IPR011989 -
Vvi7g0648 801 PANTHER U BOX DOMAIN-CONTAINING 43 789 - -
Vvi7g0648 801 MobiDBLite consensus disorder prediction 389 462 - -
Vvi7g0648 801 Coils Coil 193 213 - -
Vvi7g0648 801 SMART Ubox_2 253 316 IPR003613 GO:0004842|GO:0016567
Vvi7g0648 801 SUPERFAMILY ARM repeat 507 788 IPR016024 -
Vvi7g0648 801 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 638 680 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0648 Vvi-Chr7 6410084 6415980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0648 15 801 U-box Gene Family AT3G54790 55.626 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0648 - - vvi:100266964 1546.95