Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0633 ATGGGGAGAGCTCCATGTTGTGAGAAGATGGGGTTGAAGAAAGGTCCATGGACTCCCGAAGAAGATCAGATTTTGGTCAATTACATCCACCTTTATGGCCATGGAAACTGGAGGGCACTTCCCAAACAAGCTGGCTTATTGAGGTGTGGAAAGAGTTGCAGACTTCGATGGACGAATTATCTGAGGCCGGATATCAAACGGGGAAACTTCACCAGTGAAGAAGAAGAAACCATCATCGAGTTACATGAAAGGCTGGGCAATAGATGGTCAGCGATAGCAGCGAAACTACCGGGGAGGACAGACAATGAGATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTCAAGCACAACCACGCCACGCCACCCCCTAAAAGACACTCTCTTGATGCGTCCCACGTCGAAAAACAACAAAACCCCATTAGTTCTGCAACCAATTCGAGATCGGAGAGCCTTGGGTATGGACCAGTACTGTCCCCACAGCAGTCCTTTAGCGATATCTCCTCAGCCGCCACCACCACGACCACCGCCACCATGTCCGACATTACTACACCCTGCATTAAGGTCGATTCACTGGAGGAGTTCCCAGAAATGGACGAGAATTTCTGGTCGGAAGTACTGTCATCCAACAAATCCGGCGCGGCGGGTGATTTGCCAGGGGCGGCCAGTGGTCCACAGCTTCAGTTTCCATTCTCTCCGCGTGCTGTCATTGGCAGTAGTCCATATAGCACGTATGACATGGACATGGAATTTTGGTACAATATTTTCACAAGGTCCGGGGAGTTGCATGAATTATCAGAAATATGA 810 0.4951 MGRAPCCEKMGLKKGPWTPEEDQILVNYIHLYGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTSEEEETIIELHERLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLKHNHATPPPKRHSLDASHVEKQQNPISSATNSRSESLGYGPVLSPQQSFSDISSAATTTTTATMSDITTPCIKVDSLEEFPEMDENFWSEVLSSNKSGAAGDLPGAASGPQLQFPFSPRAVIGSSPYSTYDMDMEFWYNIFTRSGELHELSEI* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0633 269 MobiDBLite consensus disorder prediction 115 154 - -
Vvi7g0633 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi7g0633 269 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi7g0633 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi7g0633 269 CDD SANT 16 61 IPR001005 -
Vvi7g0633 269 SMART sant 13 63 IPR001005 -
Vvi7g0633 269 SMART sant 66 114 IPR001005 -
Vvi7g0633 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi7g0633 269 FunFam MYB-related transcription factor 13 66 - -
Vvi7g0633 269 Gene3D - 68 141 - -
Vvi7g0633 269 Gene3D - 11 67 - -
Vvi7g0633 269 MobiDBLite consensus disorder prediction 135 154 - -
Vvi7g0633 269 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vvi7g0633 269 FunFam Transcription factor MYB15 68 140 - -
Vvi7g0633 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Vvi7g0633 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi7g0633 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0633 Vvi-Chr7 6210990 6212398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0633 1 269 MYB Transcription Factor Family AT2G31180 51.282 2.17e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g0633 Myb_DNA-binding 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0633 K09422 - vvi:100233135 531.176