Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0627 ATGGATTCTTCCTTCTTTCATCACCACCAAATTTCAGGATTCTCACTTGAGCCATCACCATTCGATTCACTGGAGTGTTTTTCTCCATGGGATGAGCCTCTTTTCAGTGATAATTCACTTCCATTCAATATAAATGGCTCCAAAGAGATGTTACCGGAGGGAGCTACAGACTCATCTCAGCCGGTATCATCTGCAGGAGCCAAGGAGGATGAGGAGAGTTCCAATGCCAAAGAGGCAGCAATATCCAAGGATGAAAAGTCGTATAGAGGTGTTAGGAGGCGGCCATGGGGGAAGTTTGCTGCCGAGATAAGGGACTCAAATAGGCATGGCAGGAGAGTGTGGCTTGGAACATTTGATACCTCAGAGGATGCTGCTTTGGCATATGACCGAGCTGCATATTTGATGAGGGGGTCAATGGCCATCCTCAATTTTCCTGTAGAGCGCGTTAAGGAGTCACTCAGAGACATGAAGCATGACCATGAGGATGGTGGGTCGCCGGTGCCGGTACCGGCACCAGAGTGTGGACGCTCAAAGGGGAGAAAATCAGCTAATGGAAAAAATGAAGACAAGGATGTAAGCCCACGGGATGTTCTGGTGTTGGAGGACTTAGGAGCTGATTATTTGGAGCAGCTCTTGTGTTCATCAGGAAGCTACTGA 657 0.4825 MDSSFFHHHQISGFSLEPSPFDSLECFSPWDEPLFSDNSLPFNINGSKEMLPEGATDSSQPVSSAGAKEDEESSNAKEAAISKDEKSYRGVRRRPWGKFAAEIRDSNRHGRRVWLGTFDTSEDAALAYDRAAYLMRGSMAILNFPVERVKESLRDMKHDHEDGGSPVPVPAPECGRSKGRKSANGKNEDKDVSPRDVLVLEDLGADYLEQLLCSSGSY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0627 218 MobiDBLite consensus disorder prediction 157 195 - -
Vvi7g0627 218 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 MobiDBLite consensus disorder prediction 45 86 - -
Vvi7g0627 218 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 MobiDBLite consensus disorder prediction 70 86 - -
Vvi7g0627 218 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677
Vvi7g0627 218 FunFam Ethylene-responsive transcription factor 2 86 147 - -
Vvi7g0627 218 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 MobiDBLite consensus disorder prediction 52 69 - -
Vvi7g0627 218 PANTHER DNA-BINDING DOMAIN 63 211 IPR044808 GO:0003700|GO:0009873
Vvi7g0627 218 Gene3D AP2/ERF domain 86 147 IPR036955 GO:0003700|GO:0006355
Vvi7g0627 218 CDD AP2 86 146 IPR001471 GO:0003700|GO:0006355
Vvi7g0627 218 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0627 Vvi-Chr7 6104627 6105283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0627 40 215 AP2-EREBP Transcription Factor Family AT3G23240 53.039 2.92e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0627 AP2 6.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0627 K14516 - vvi:100260028 445.277