Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0626 ATGGATTCTTCCTTCTTTCATCAATACCAAACTTCAGGATTCTCACCTGAAGCCTCGCCATTCGATTCACTGGAGTGTTTTTCTACATGGGATGAGCCTCTTTTCGACCACAATTCACTTCCGTTCAACACAATTGACTCAGAGGAGATGATACTATTTGATATGCTAGCTGAGGGAGCTAGAGACTCGTCAGAGACGGCATCATCCGCAGGAGTAGTTAAGGAGGATGAGGTGAGTTCCAATGCCAAAGAGGCAACACCTAAGAATGAAAAGTTATATAGAGGTGTTAGGAGGCGGCCTTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCGACCAGGCATGGCAGAAGGGTGTGGCTTGGTACATTTGATACTGCTGAGGCTGCTGCTTTAGCATATGATCAAGCAGCATTTTCCATGAGGGGGCCAAGGGCTGTCCTCAATTTTTCGGAGGAACGGGTGAAGGAGTCGCTAAGGGACATCAAGTGTGGCTGGAAAGATGGGGGCTCCCCGTTGGTGGCTATGAAGAGGAAGCATTTAATGAGGAGAAAATTAGCCTGCAGGGAAAAGAAAAAGGAGAAAGAGGCAAGGGAACAGCATGTTGTAGTGTTGGAGGATTTAGGAGCTGATTATTTGGATCAACTCTTGTGTTCATCACAGAGCTGTTGA 669 0.4738 MDSSFFHQYQTSGFSPEASPFDSLECFSTWDEPLFDHNSLPFNTIDSEEMILFDMLAEGARDSSETASSAGVVKEDEVSSNAKEATPKNEKLYRGVRRRPWGKFAAEIRDSTRHGRRVWLGTFDTAEAAALAYDQAAFSMRGPRAVLNFSEERVKESLRDIKCGWKDGGSPLVAMKRKHLMRRKLACREKKKEKEAREQHVVVLEDLGADYLDQLLCSSQSC* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0626 222 MobiDBLite consensus disorder prediction 64 87 - -
Vvi7g0626 222 Gene3D AP2/ERF domain 92 151 IPR036955 GO:0003700|GO:0006355
Vvi7g0626 222 PANTHER DNA-BINDING DOMAIN 69 216 IPR044808 GO:0003700|GO:0009873
Vvi7g0626 222 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Vvi7g0626 222 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Vvi7g0626 222 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Vvi7g0626 222 FunFam Ethylene-responsive transcription factor 2 91 151 - -
Vvi7g0626 222 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677
Vvi7g0626 222 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Vvi7g0626 222 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Vvi7g0626 222 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0626 Vvi-Chr7 6067862 6068530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0626 5 222 AP2-EREBP Transcription Factor Family AT3G23240 51.802 1.31e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi7g0626 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0626 K14516 - vvi:100242942 427.172