Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0625 ATGGATTCTTCTTCCTTCTATCATCAATACCAAAGTTCAGAATTCTCACCTGAATCCTCATCGTTCGGTTCATCGGAGTATTTCTCGTCCTGGGACGAGCCTCTTTTCCACCACAATTCACTTCCATTCAACATAAATGACTCGGACGAGATGATACTATTCGATATGCTAGCCGAGGGAGCTAGAGACTCGTCGGAGACAGCGTCATCCGTCGGAGGAGCAGCCAAGGAGGAGGAGGTGACTTCCAATGCTAAAGAGCCCACACCTAACAAGAAGGAGAAAGAGAAGACGTATAGGGGTGTCAGGAAGCGGCCATGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACCAGGCATGGGGTAAGGGTGTGGCTTGGTACATTTGATAGTGCCGAGGCTGCGGCTTTAGCATATGATCAAGCAGCATTTTCCATGAGGGGGACCATGGCGGTCCTCAATTTCCCGGTGGAGCGCGTGGTGGAGTCCCTAAGGGACATCAAGTACGCCTGCGAGGACGGCGGCTCCCCGGTGGTGGCGCTCAAGAGGAGGCACTCTATGAGAAGAAAATCAACTGGTCGGAAAAATAAAAGCAAGGAGGTAAAGGCACAGAATGTTGTGGTATTAGAGAATTTAGGAGCTGATTATTTGGAGCAACTCTTGTGTTCATCAGAGAACCATTGA 681 0.5051 MDSSSFYHQYQSSEFSPESSSFGSSEYFSSWDEPLFHHNSLPFNINDSDEMILFDMLAEGARDSSETASSVGGAAKEEEVTSNAKEPTPNKKEKEKTYRGVRKRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGTMAVLNFPVERVVESLRDIKYACEDGGSPVVALKRRHSMRRKSTGRKNKSKEVKAQNVVVLENLGADYLEQLLCSSENH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0625 226 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700|GO:0006355
Vvi7g0625 226 MobiDBLite consensus disorder prediction 1 26 - -
Vvi7g0625 226 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Vvi7g0625 226 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Vvi7g0625 226 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Vvi7g0625 226 PANTHER DNA-BINDING DOMAIN 64 220 IPR044808 GO:0003700|GO:0009873
Vvi7g0625 226 MobiDBLite consensus disorder prediction 79 99 - -
Vvi7g0625 226 FunFam Ethylene-responsive transcription factor 2 96 157 - -
Vvi7g0625 226 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Vvi7g0625 226 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Vvi7g0625 226 SUPERFAMILY DNA-binding domain 97 157 IPR016177 GO:0003677
Vvi7g0625 226 MobiDBLite consensus disorder prediction 65 99 - -
Vvi7g0625 226 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0625 Vvi-Chr7 6057352 6058032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0625 41 225 AP2-EREBP Transcription Factor Family AT3G23240 57.368 7.10e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0625 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0625 K14516 - vvi:100241302 416.387