Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0621 ATGGAAGGAGGAGGGAGGAGGAGGGAGGGGGAGGACAAGGCAAGAGAGGTTCGGTATCGGGGAATTCGGAGACGGCCATGGGGGAAGTTTGCAGCGGAGATACGAGACCCTTCAAGGAACGGGGCGCGGTTGTGGCTAGGAACATTTGACACTGCGGAGGAAGCAGCCAGGGCCTATGATCGAGCAGCCTATGCTTTTCGAGGTCATCTGGCCATTCTCAACTTCCCCAATGAACACCAGTATCAAAACCCAGGGTATGGGCAGACTTTCTCTTCTTCATCATCATCATCCTATTCTTTGGGTTCTTCATCTTCATCTTCCGCTGGTCGGAGCACCGGTTCTGGGGCTAGCATTTCATCCAGAGACCAAGAAGGGCAAGTGATTGAGTTCGAGTATTTGGACAACAACTTGCTGGAGGAGCTTCTTGAACCACAGGGTGATAGAAGAGGGAATAATTAG 459 0.5207 MEGGGRRREGEDKAREVRYRGIRRRPWGKFAAEIRDPSRNGARLWLGTFDTAEEAARAYDRAAYAFRGHLAILNFPNEHQYQNPGYGQTFSSSSSSSYSLGSSSSSSAGRSTGSGASISSRDQEGQVIEFEYLDNNLLEELLEPQGDRRGNN* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0621 152 MobiDBLite consensus disorder prediction 81 122 - -
Vvi7g0621 152 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vvi7g0621 152 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vvi7g0621 152 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vvi7g0621 152 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vvi7g0621 152 PANTHER DNA-BINDING DOMAIN 13 143 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0621 Vvi-Chr7 6029368 6029826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0621 15 149 AP2-EREBP Transcription Factor Family AT3G23230 60.000 5.59e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0621 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0621 - - vvi:100258333 244.588