Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0620 ATGGAGGAAAACTCCAAGGGGAAAGTGAAAGAACAGCACAAAAGTTCCGTGAGATACAGAGGTGTCAGAAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGATTCAAATAGACAAGGTGTCCGCATGTGGCTTGGGACTTTTACCACAGCAGAGGAGGCAGCAAGAGCATATGATCAAGCTGCATATGCAATGAGGGGTGGATTAGCCATTCTCAACTTCCCTGAGGACTATGGTTTATCAAATGCCTCTTCTCGGCCCCACTTCTCATCGTCTTCCTCACCATTGCCATTGATTAAGTTTGAGAGCCCGGACAACGATACAGTCACAAACCAAAACCAAGTTTTTGAATTTGAATATTTAGATGACAAGGTGTTAGAGGACCTTCTTGAGTGTGAGGAGAAGGAAACAACCCAGAAAAGAGCAAAACATTAG 438 0.4475 MEENSKGKVKEQHKSSVRYRGVRRRPWGKFAAEIRDSNRQGVRMWLGTFTTAEEAARAYDQAAYAMRGGLAILNFPEDYGLSNASSRPHFSSSSSPLPLIKFESPDNDTVTNQNQVFEFEYLDDKVLEDLLECEEKETTQKRAKH* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0620 145 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 MobiDBLite consensus disorder prediction 1 20 - -
Vvi7g0620 145 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 MobiDBLite consensus disorder prediction 1 16 - -
Vvi7g0620 145 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Vvi7g0620 145 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vvi7g0620 145 PANTHER DNA-BINDING DOMAIN 10 138 IPR044808 GO:0003700|GO:0009873
Vvi7g0620 145 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vvi7g0620 145 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0620 Vvi-Chr7 6027009 6027446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0620 17 137 AP2-EREBP Transcription Factor Family AT3G23230 60.976 1.14e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0620 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0620 - - vvi:100263477 264.618