Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0619 ATGGAAGAACACCCTAAAGGGAAGTGTAAGGAAGAGAAAGGAGAGATTCGTTATAGAGGCGTGAGAAGGCGGCCCTGGGGAAAATTTGCAGCAGAGATTCGTGATTCGACTAGGCAAGGAGCCCGCTTATGGCTTGGGACTTTTACCACTGCCGAGGAAGCGGCAAGAGCATATGACAAAGCTGCCTATGCAATGAGGGGTCACTTGGCCATTCTCAACTTCCCTGAGGAACATCAACAGGTTGCATCTCCTGCTGTTCCCCCTTCATCACCCAACTTCCCCAAGGAACGTCAAAATATTGCCTCTCCTCACCCTTACTCTTCACCATGGTCATCATCATCTTCACCTATGATGTCTGAGAATACAGAGAGAACAAGTGATGTGCATGAAAAACTAGTTTTTGAATTTGAGTACTTGGATGACAAGTTGTTAGAGGACCTTCTTGAGACTTCAGAGAAGTAA 462 0.4654 MEEHPKGKCKEEKGEIRYRGVRRRPWGKFAAEIRDSTRQGARLWLGTFTTAEEAARAYDKAAYAMRGHLAILNFPEEHQQVASPAVPPSSPNFPKERQNIASPHPYSSPWSSSSSPMMSENTERTSDVHEKLVFEFEYLDDKLLEDLLETSEK* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0619 153 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vvi7g0619 153 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vvi7g0619 153 MobiDBLite consensus disorder prediction 79 126 - -
Vvi7g0619 153 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vvi7g0619 153 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vvi7g0619 153 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vvi7g0619 153 PANTHER DNA-BINDING DOMAIN 11 149 IPR044808 GO:0003700|GO:0009873
Vvi7g0619 153 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vvi7g0619 153 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vvi7g0619 153 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vvi7g0619 153 MobiDBLite consensus disorder prediction 92 122 - -
Vvi7g0619 153 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0619 Vvi-Chr7 6024601 6025062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0619 15 153 AP2-EREBP Transcription Factor Family AT3G23230 56.835 3.15e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0619 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0619 - - vvi:100241203 228.409