Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0612 ATGGATCGATTCCACATGCATTTTTCCAACCATGGATCCGAAGCTCTTGTTTACATCAAAACCCATGAAAACCCAATCTATCAACCCTCCTCCCCTGCTTCAGACACTGCTTTCCCTATCTTAGCCATTGCTGTGCTAAGCATTATGGCCACGGCTTTCTTACTAGTTAGTTACTACATCTTCGTGATCAAGTGCTGCTTGAGCTGGCACCATATTGAACTGCTCAGACGGTTTTCTACCTCTCAATCTCGACAGCAGGAAGATCCACTGATGGACTATTCACCTACGTTTCTGAATCGTGGGCTGGATGAATCCTTGATTCACCAAATCCCAACTTTTCTGTTCAGAAGAGGACAGAGTGAAGAGGGAAGCTTCCATGGATGTGTGGTCTGTTTGAACGAGTTTCAAGAACATGATATGATAAGAGTTCTTCCCAACTGCAGCCATGCATTCCACTTGGATTGCATTGATATATGGCTACAAAGCAATGCTAATTGTCCCTTATGCAGATCAAGCATTTCAGGAACAACCCGGTACAGAAATGATCCGATCATTGCCCCAAGCTCTTCACCCCAAGATCCACGGCCATTCAGTGAGGCTCTCATGGGCGGTGATGATGATTTTGTGGTCATAGAATTGGGGGGAGGAGACGACAGAGGCGTCATACTACCACCAAGACAACAAGAAAGAGCTGATTCAAGAGAACTGTTGAGGCCCCTCCCCAACAAAGTTGCAGCAGAAGCTAGAGAACAAAAAATCAAGAAAGTTTCATTATGTTTCAAGTATGGGAGATGA 795 0.4503 MDRFHMHFSNHGSEALVYIKTHENPIYQPSSPASDTAFPILAIAVLSIMATAFLLVSYYIFVIKCCLSWHHIELLRRFSTSQSRQQEDPLMDYSPTFLNRGLDESLIHQIPTFLFRRGQSEEGSFHGCVVCLNEFQEHDMIRVLPNCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRYRNDPIIAPSSSPQDPRPFSEALMGGDDDFVVIELGGGDDRGVILPPRQQERADSRELLRPLPNKVAAEAREQKIKKVSLCFKYGR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0612 264 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vvi7g0612 264 CDD RING-H2_EL5-like 128 170 - -
Vvi7g0612 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 175 IPR013083 -
Vvi7g0612 264 PANTHER RING-H2 FINGER PROTEIN ATL16 21 254 IPR044600 GO:0016567|GO:0016740
Vvi7g0612 264 SMART ring_2 128 169 IPR001841 -
Vvi7g0612 264 Pfam Ring finger domain 128 170 IPR001841 -
Vvi7g0612 264 SUPERFAMILY RING/U-box 107 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0612 Vvi-Chr7 5942004 5942809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0612 29 257 C3H Transcription Factor Family AT1G04360 48.450 4.02e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0612 K19041 - vvi:100242856 496.893