LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0609	ATGGGCTGGTCCGGCTCGACAATGGGCAGGACGAGGAGGGGCTTGGCAATTCCATTGAACGGCCCAGAGAAACCCCGGGAATTCTGTGGCGGGAAATCTGACCTGGCAGCGCACACGTCAGTAGGTTTCGCGCCAAAAACCCTAGTATACCTTCGTCTTCTCCGCCACCACCTGCAAATCCTTACTGCCACTCTGCAACTCTACTGTTTCTACTCTCCACAAACCACAATGTCCGCTTCAGCATTCAATCCTTTCAAGTCGAAGAAGATCGCAAAGTCAAGCTCGAAGGTAGATCAAACCAAAGCTCCAGATCACGATCCATGGAGCTCCAAAACCCCCGAGAAGCCCGCCCTCCCCCCTCGCCGAGGTCGAAATGGCTCCGTCGCACTCTCCATTAAAGAAGTGAAACAAATGGCCACTACCCTCACAAAGTCAGCTCCAGTCCAATCCGCTCGAACCGCTCCGGTGGGATCTGCTCGGACCGCATCGGTGGATCCTGTTGCGTCGCCTTCGAGACAGAAGAATGTGAACCGCTCTATGAAGCTACCGGAAAAGTATGAGATGTTGGCTCAGTTTTTTGATAGCTTGGATAGCTCAATTCGGTTGCTGCGATTGAAGGGTTCAATGTCGACATTTACGAATATATGCCCGAAAATTGAGTGTTTAACCGATAGGAGGTTCTCACATGGCAACTTAGCTCAATTGAAGTACATTTTGCCTGAGGCTATCGTGATAAAGAAGGTTCTGATGCTTGATGAGCGAACCAGTTGTATGAAACCAGATCTCCTTATTACACTGGATGTTGATGGGATAGAGAACTCAAAATTAGAAAGTGGAAATTCTCATTTGAGGAAAATATTTCGAGCACGGCTTTTGGATTTTGCTAAAGCCCATCCCGAGGGAGATGAAATTCCAGAGGAAACACTTCCAGAGCCATTCAGTCAGTCAAAGCAAGATCTTCATTCAAACATGATCAAAGATTCCTACTCTTCGTTGCCAGCGGAGACATCTTGTGATGTGCTAATGGAACAGCCACAAGCAGTAGCATCCCATTTGTCTCGATGCTTCCAGAGGCGCTTTTCACAGAAAATTTCAGGTGAAGCAGAGAACAGTAATAAAAAGCCAGCAAACTTTTCTCTCCAACTTTCAGATCTTCCAGTTCAGGATCCATACCTTAACAAAAGTTCCTCCAATGAGGAAGTTGTTGCTACTGTTGCGCCATCCCCTGTTAAATCTTCATCTCCAGCTCATTTACCATTGTCTCACCCACCTGCAACTCCATTGAAAAAGACAGATTCTACAGACAATCAAGATTTTTGTTCCATGAAAACCCCTGACATTCAAGTGACCCCTGCCAAACTTGCTTTTAGTCCAGCCAGGTTGATGACAATGACACCTTCATTGCAGCCACCAAAGAGATGTCTCATGAGTCCGCATGATGATTCCACCAATTCACCAAACAAGTTAGTTAGACGTCCAGCCCGTTCCAGGTCATTGAAATTTGACACTCCTGTGAAGGGTGCAGAGATTAAGGAAGAAGTAAACGAGAAAGGGAGCTTGTCAGTTGATAACGATATTCTTGACATTCTTCCTGAGAATCTTCTGGAATCGATAAGGGAGAAAGAGAGAAAGGCAATAGAAGAGCAGGATCCAGCCATCTCACAAGCAAAGAGGAGGCGAGAGATGATTGTTGGTCTACCTAAGCTCTTCAACATGATTCATTTCTTATTTCAGTCAATCAATCGTTCCGTTGTCACAAAAGAGGAGCTTATGCACAAGATACTTGCAAGCCATTGTGATATTGTTGATAGAAGAGAAGTTGAAGAACAGCTTAAGTTGCTACAAGAACTAGTTCCAGAATGGATTTCCGAGAAATTGGCATCTAGTGGGGACTTGCTATTATGCATCAAGAAGACATCAAGTCCTGAGTCGATTCGACAAAGACTAATGGAAGCAAAGTGA	1962	0.4551	MGWSGSTMGRTRRGLAIPLNGPEKPREFCGGKSDLAAHTSVGFAPKTLVYLRLLRHHLQILTATLQLYCFYSPQTTMSASAFNPFKSKKIAKSSSKVDQTKAPDHDPWSSKTPEKPALPPRRGRNGSVALSIKEVKQMATTLTKSAPVQSARTAPVGSARTASVDPVASPSRQKNVNRSMKLPEKYEMLAQFFDSLDSSIRLLRLKGSMSTFTNICPKIECLTDRRFSHGNLAQLKYILPEAIVIKKVLMLDERTSCMKPDLLITLDVDGIENSKLESGNSHLRKIFRARLLDFAKAHPEGDEIPEETLPEPFSQSKQDLHSNMIKDSYSSLPAETSCDVLMEQPQAVASHLSRCFQRRFSQKISGEAENSNKKPANFSLQLSDLPVQDPYLNKSSSNEEVVATVAPSPVKSSSPAHLPLSHPPATPLKKTDSTDNQDFCSMKTPDIQVTPAKLAFSPARLMTMTPSLQPPKRCLMSPHDDSTNSPNKLVRRPARSRSLKFDTPVKGAEIKEEVNEKGSLSVDNDILDILPENLLESIREKERKAIEEQDPAISQAKRRREMIVGLPKLFNMIHFLFQSINRSVVTKEELMHKILASHCDIVDRREVEEQLKLLQELVPEWISEKLASSGDLLLCIKKTSSPESIRQRLMEAK*	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0609	653	FunFam	CDT1-like protein a chloroplastic	523	653	-	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	91	111	-	-
	Vvi7g0609	653	Pfam	DNA replication factor CDT1 like	182	247	IPR014939	-
	Vvi7g0609	653	SMART	CDT1_2	182	311	IPR014939	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	464	490	-	-
	Vvi7g0609	653	CDD	Cdt1_m	171	317	IPR014939	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	141	157	-	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	389	415	-	-
	Vvi7g0609	653	Gene3D	-	523	653	IPR038090	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	389	435	-	-
	Vvi7g0609	653	CDD	Cdt1_c	524	650	IPR032054	-
	Vvi7g0609	653	SUPERFAMILY	"Winged helix" DNA-binding domain	171	313	IPR036390	-
	Vvi7g0609	653	PANTHER	DNA REPLICATION FACTOR CDT1	80	653	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vvi7g0609	653	Pfam	DNA replication factor Cdt1 C-terminal domain	533	625	IPR032054	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	90	125	-	-
	Vvi7g0609	653	MobiDBLite	consensus disorder prediction	141	178	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0609	Vvi-Chr7	5914028	5917666	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0609	84	651	Core DNA Replication Machinery Family	AT2G31270	43.822	4.41e-120	367

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0609	K10727		-	vvi:100263560	1083.55