Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0602 ATGGCCTCTGCAAGTGGCTCCCCTTGTGGTGCATGCAAGTTCCTGCGGAGGAAGTGTGCAGCTGACTGCGTTTTTGCGCCTTATTTCTGCTCGGAGCAAGGCCCGGCTCGGTTTGCCGCAATTCACAAGGTGTTTGGTGCCAGCAATGTGTCCAAGCTGTTGTTGCATGTGCCGGTGGCTGATCGCTGTGAGGCCGTCGTCACCATCGCTTATGAAGCTCAAGCCCGGATTAGAGATCCCGTCTATGGCTGCGTCGCCCACATCTTCGCCTTGCAGCAGCAGGTAGCATGCTTGCAAGCTCAGCTGATGCAGCTGAAGGCTCAACTGGCCAACAACACGGGGAATTTAGAGAATCAATGGCAGGGAAATGTTTCAGGAGCGCCTTCCTTTCAGAATTTTCCAGGTTACATGAACTCAGTATCGCCGCAGTGCTCACTGGAATTGATTGATCACAACAGTGATGGAATGACAATGCAAGATATCCAAAGTAGAGATGAATTTTCATTCCAAACTTGCTCTAGGAAAAGGCCACCCCACAATGACCTGGGTGAGCTTCAAGAACTGGCCCTCAGAATGATGAGAAACTGA 588 0.5136 MASASGSPCGACKFLRRKCAADCVFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQLKAQLANNTGNLENQWQGNVSGAPSFQNFPGYMNSVSPQCSLELIDHNSDGMTMQDIQSRDEFSFQTCSRKRPPHNDLGELQELALRMMRN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0602 195 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Vvi7g0602 195 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Vvi7g0602 195 Coils Coil 88 115 - -
Vvi7g0602 195 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0602 Vvi-Chr7 5846731 5847540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0602 3 195 AS2 family AT2G42430 53.390 2.11e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g0602 LOB 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0602 K13944 - vvi:100261792 381.333