Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0601 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTTTTGAGGAGAAAATGTGTGAGGGGTTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGCGCTGCCCACTTTGCTGCCATTCATAAGGTTTTTGGTGCAAGCAATGTGTCCAAACTCCTCGGTCACCTACCGGTGAGTGACAGGTGTGAAGCTGCGGTTACCATTGCTTATGAAGCTCAAGCCAGACTTCAAGATCCCATCTATGGATGTGTCTCACACATTTTTGCCCTCCAGCAGCAGGTTGTTAATCTACAAGCACAGCTAGCTTCTCTGAAGGAGCAAGCATCTCAAAGCCTTTTCAATGGGTCCAGTGCTGGAAACCTCAATGAGAAATTCTTTGGGAAACTCCCTTCTTACCAGCAAGACTTTCAGAGTTGGTTTCAGTTGGAGAATTTGAACACAGTGCCACAGTTTGATCCAAACCTCGCCAGTAATTCGGAAACCATGCCGTATTCCCAAAGTGGGTTCGTGGACCCTAGCCCTATGGAGAATTATAAAAATTCAATGTTCCCGGAGGAAAATGTCTCCTTCGCCAGTTTCGAAGAGGCTTCTCATTCCATGGCTTCTCTGGACATGCAAGGAAACAGAAGGAAATGGGCTTACCAAGATGATGCTGACGAACTCCAGTCAGTGGCCTTTGGCTATATCCGGCATTCATGA 699 0.4678 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSDRCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQASQSLFNGSSAGNLNEKFFGKLPSYQQDFQSWFQLENLNTVPQFDPNLASNSETMPYSQSGFVDPSPMENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0601 232 Coils Coil 87 107 - -
Vvi7g0601 232 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Vvi7g0601 232 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vvi7g0601 232 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0601 Vvi-Chr7 5838032 5838834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0601 7 229 AS2 family AT3G58190 51.982 4.07e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g0601 LOB 3.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0601 K13945 - vvi:100266975 470.314