Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0599 ATGAAGGACCCAAGCATGTGGTTTCCTGACCACAACTATCATGAATCAATGTTTTCCACGTTCAAGAGAATCAATGCCAAGGAGCATGTGGTTGGATGGTACAACACAGGACCAACACTGCAGGAGAACGACCTAGATATTCACGGACTGTTCCATGACTATGTTCCTAATCCTGTCTTAGTCATAATTGATGTCCAACCAAAGGAGATAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGAGTGCAACCCAGAAAAGCCAGAATGGTTCAAGCAGCTGA 294 0.4422 MKDPSMWFPDHNYHESMFSTFKRINAKEHVVGWYNTGPTLQENDLDIHGLFHDYVPNPVLVIIDVQPKEIGIPTKAYYAVEEVKESATQKSQNGSSS* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0599 97 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 2 56 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi7g0599 97 FunFam Uncharacterized protein 1 95 - -
Vvi7g0599 97 Gene3D Cytidine Deaminase, domain 2 1 95 - -
Vvi7g0599 97 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0599 Vvi-Chr7 5817249 5817542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0599 10 64 Eukaryotic Initiation Factors Gene Family AT2G39990 36.364 3.74e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0599 K03038 - ming:122058299 181.03