Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0597 ATGGAATCAGGCCCTCGTGAGGAAGCTAGGAATTCAAGCGAAGAAACCGAGAGACCGGAGCAAGAGGAGGATGAGGAAATGATCACTGGCCCGTCCTATGATTGTGTGTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCCTAGGTGGACACATGAATATCCATAGAAAAGATAGAGCCAAGGCCAAGCCTCCTTCATCAGTACTTCCCAAAAAACCTGAAGAAAATTTCGTGAATTCTGGCTTCTGCGTCTCAATCTTAAGCTACAAGCCGCCCAACTCCACAGCTCCTGAGGCACAGATAAATTATCAAGAGTATATTCTGGCATCCACATCTCCTGCAAGGGACCCTATTGATGATTTTCGTGCTGAGAAGCAAGAGACTCCGAACGTATGCAAAGAGGATTGGCGCACGTGTCTGAGCTTGCAGGTTGGTCCGTCTTGTGCATATGATAGTAAAGAGAAGGGACAAGAAGAGAAGCAAGAAGATGAACTGGATTTGGAGCTTCGACTTGGTCACAATCCCTAG 528 0.4735 MESGPREEARNSSEETERPEQEEDEEMITGPSYDCVFCKRGFTTAQALGGHMNIHRKDRAKAKPPSSVLPKKPEENFVNSGFCVSILSYKPPNSTAPEAQINYQEYILASTSPARDPIDDFRAEKQETPNVCKEDWRTCLSLQVGPSCAYDSKEKGQEEKQEDELDLELRLGHNP* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0597 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Vvi7g0597 175 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Vvi7g0597 175 MobiDBLite consensus disorder prediction 150 175 - -
Vvi7g0597 175 PANTHER OS07G0101800 PROTEIN 9 174 - -
Vvi7g0597 175 MobiDBLite consensus disorder prediction 1 17 - -
Vvi7g0597 175 MobiDBLite consensus disorder prediction 53 73 - -
Vvi7g0597 175 SUPERFAMILY beta-beta-alpha zinc fingers 32 59 IPR036236 -
Vvi7g0597 175 MobiDBLite consensus disorder prediction 1 30 - -
Vvi7g0597 175 MobiDBLite consensus disorder prediction 152 175 - -
Vvi7g0597 175 Gene3D Classic Zinc Finger 12 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0597 Vvi-Chr7 5794112 5794639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0597 33 77 C2H2 Transcription Factor Family AT5G43540 56.250 2.76e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi7g0597 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0597 - - vvi:100852782 330.487