Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0596 ATGGAGAAGAATCCTTTGACTTTGAGCAGTGGCCAAGTCAAAGCCACGAGGGAGTGTAACAGGTTGATCAGCTCAGAATATGGTGCTTCACGGCCTCCAAAATCCTATCCATGTAGCTTCTGCAGGAGAGAATTCAGTTCCGCTCAAGCTCTTGGGGGTCATATGAATGTTCACAGAAGAGATAGAGCCTGGTTGAGACACTCACTCCCTTGGGCTTCTCAGTATAATAACCCTAACCCTAGTTTCTCATCACCACATTCAGCTAAATTCCTGCAGTTCAATCTCGCTGTTCCCTCACTTCCTCCATCTTTCTCTGCTTTCTCTTCATCACCATCCTCAGCCTCTACTGATGAAGAGAATTATGGAGATACCAAGGAGGAGGAGAAGAAGAGCAGCAAAAGAGCTTTTGTTGGGCTTGGAAAAGTAGAGAGTTTCATGCAAGAAGATGAGGTTAAAATTTTGAAAAGGGAGAAGGGTATTAGGTCAGATCCAAAGGAGAATTTGGACTTGGAGCTCCGACTTGGGTACTCCAATAATAATTAG 543 0.4457 MEKNPLTLSSGQVKATRECNRLISSEYGASRPPKSYPCSFCRREFSSAQALGGHMNVHRRDRAWLRHSLPWASQYNNPNPSFSSPHSAKFLQFNLAVPSLPPSFSAFSSSPSSASTDEENYGDTKEEEKKSSKRAFVGLGKVESFMQEDEVKILKREKGIRSDPKENLDLELRLGYSNNN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0596 180 MobiDBLite consensus disorder prediction 103 118 - -
Vvi7g0596 180 SUPERFAMILY beta-beta-alpha zinc fingers 33 64 IPR036236 -
Vvi7g0596 180 MobiDBLite consensus disorder prediction 103 133 - -
Vvi7g0596 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vvi7g0596 180 Pfam C2H2-type zinc finger 36 60 - -
Vvi7g0596 180 MobiDBLite consensus disorder prediction 119 133 - -
Vvi7g0596 180 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vvi7g0596 180 Gene3D Classic Zinc Finger 15 74 - -
Vvi7g0596 180 PANTHER OS07G0101800 PROTEIN 20 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0596 Vvi-Chr7 5788161 5788703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0596 28 177 C2H2 Transcription Factor Family AT3G23130 38.983 8.34e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi7g0596 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0596 - - vvi:104879849 330.487