Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0578 ATGTACGGAGATGGGCCCAGGAAGACCATTGTCACTGGAACCAAAAGCTACCGCGACGGAATCACCACTTACAAGACTGCCACATTCTCGGCCATTGGAAAGGGGTTTGTTGCGAGGTCGATGGGATTCGTCAACACCGCAGGTCCTGACGGGCACCAGGCTGTTGCTCTCCGCGTCCAATCAGATATGTCAGCAATCTTCAACTGCAGAATGGACGGGTACCAAGACACCTTGTACATCCAGGCCCATCGCCAGTTCTACCGCAATTGTGTCATCTCGGGCACCATAGACTTCATCTTCGGTGACTCGACGACTGTGATCCAGAACTCCTTGATCATAGTAAGAAGGCCAAAGGACAACCAACAAAACACAGTGACTGCACACGGAAAAGCTGAAAAGCGTGAAACCACTGGATTGGTGATCCACAATTGCAGAATCGTCCCAGAGCAAAAACTGTTCCCTGACAGGTTCAAGATCCCTTCATTCTTGGGTCGTCCATGGAAGCCGTACTCAAAGACGATTATAATGGAGACGACCTTGGGAGATTTCATCCAACCAGCCGGGTGGATGCCGTGGGCTGGGGACTTTGCCCTGAACACACTCTTCTACGCTGAGTATGGGAACCGCGGCCCTGGTGCAAACACCCGCAGCAGGGTGACATGGAAGGGTTACAGGATCATCAAGACCAGGAACGAGGCTCTTCAGTACACGTTGGCGGAGAGGGGAATAAATAAGGGAACCAAAATGATAGGAAAAGCAGTAGTTTCAGGGATATCTCTGTTCCTTGTGGTGGGTGTGATCATCGGCATTGTCAGTGTAACGCGCCCCCATGGAAGCGATCGTACTGACGGTGACACCAACATGTCGTCGTCAATGAAGGCTGTTGCCTCCGTTTGTGCCACTGCTGATTATAAGGACGCTTGTATGCAAACTCTCAGTCCGGTTCCCAAAAATGGAAGCAGTGCTACGCCCAAGGATTACATCCAGGCGGCTGTGCAAGTGACCATTAAACAGATTAAGAGCTCGATGAATCTTTCGGAGAAACTCTTCCAAGCCACTAATGACTCCAGGACGCAAATGGCCCTCGGTGACTGTAAGGACTTGTTGCAGTTTGCCATTGACGAGCTTCAGGAATCATTCTCGTCTGTGGGTGAGAGTGATCTCCAGACCTTGGATCAACTATCAACGGAGATTATGAACTGGTTGAGTGCTGCTGTTTCGTACCAACAGACATGCCTTGATGGAGTCATCGAACCACGGTTTCAGGCCGCTATGCAGAAAGGTCTGCTCAATGCCACGCAACTTACCAGCAACGCCCTAGCTATTGTGTCCGACCTTTCTCAAATTCTCACCAAATTCAATGTCCCACTGGATCTCAAGCCCAACTCCCGAAGGCTTCTCGGAGAAATTGAAGTACTTGGCCATGATGGGTATCCCACCTGGTTCTCAGCCACGGACAGAAAGCTTTTGGCTTTACAAGACAACGGCAGGCTTACGCCTAACGCTATTGTGGCCAAGGATGGCAGCGGACATTTCACGACTATTGCTGCAGCTCTCGCCGCCTACCCCAAGAACCTCAAAGGAAGATATGTTATCTACGTGAAGGCCGGAATCTACCGCGAGTACATTACCGTCACCAAAGATCATGTTAATGTGTACATGTACGGAGATGGGCCCAGGAAGACCATTGTCACTGGAACCAAATGCTACCGCGACGGAATCACCACTTACAAGACTGCCACATTCTCGGCCATTGGAAAGGGGTTTGTTGCGAGGTCGATGGGATTCGTCAACACCGCAGGTCCGGACGGGCACCAGGCTGTTGCTCTCCGCGTCCAATCAGATATGTCAGCATTCTTCAACTGCAGAATGGACGGGTACCAAGACACCTTGTACGTCCAGGCCCATCGCCAGTTCTACCGCAATTGTGTCATCTCGGGCACCATAGACTTCATCTTCGGTGACTCGACGACTGTGATCCAGAACTCCTTGATCATAGTAAGAAGGCCAAATGACAAACAACAAAACACAGTGACTGCACAAGGAAAAACTGAGAAGCGTGAAACCACTGGATTGGTGATCCACGATTGCAGAATCGTCCCAGAGCAAAAACTGTTCCCTGACAGGTTCAAGATCCCTTCATTCTTGGGTCGTCCATGGAAGCCGTACTCAAAGACGATTATAATGGAGACGACCTTGGGAGATTTCATCCAACCAGCTGGGTGGACGCCGTGGGCTGGGAAGTTCGTCCCGAACACACTCCTCTACGCTGAGTATGGGAACCTTGGCCCTGGTGCAAACACCCACAGCAGGGTGACATGGAAGGGTTACAGGATCATCAAGACCAGGAACGAGGCTCTTCAGTACACGGTCAACTCATTCATTCAGGGAAACCTCTGGCTGAAACAAATTAATATCCCTTATCTGCCAGGTCTCAAACGTTGA 2445 0.5072 MYGDGPRKTIVTGTKSYRDGITTYKTATFSAIGKGFVARSMGFVNTAGPDGHQAVALRVQSDMSAIFNCRMDGYQDTLYIQAHRQFYRNCVISGTIDFIFGDSTTVIQNSLIIVRRPKDNQQNTVTAHGKAEKRETTGLVIHNCRIVPEQKLFPDRFKIPSFLGRPWKPYSKTIIMETTLGDFIQPAGWMPWAGDFALNTLFYAEYGNRGPGANTRSRVTWKGYRIIKTRNEALQYTLAERGINKGTKMIGKAVVSGISLFLVVGVIIGIVSVTRPHGSDRTDGDTNMSSSMKAVASVCATADYKDACMQTLSPVPKNGSSATPKDYIQAAVQVTIKQIKSSMNLSEKLFQATNDSRTQMALGDCKDLLQFAIDELQESFSSVGESDLQTLDQLSTEIMNWLSAAVSYQQTCLDGVIEPRFQAAMQKGLLNATQLTSNALAIVSDLSQILTKFNVPLDLKPNSRRLLGEIEVLGHDGYPTWFSATDRKLLALQDNGRLTPNAIVAKDGSGHFTTIAAALAAYPKNLKGRYVIYVKAGIYREYITVTKDHVNVYMYGDGPRKTIVTGTKCYRDGITTYKTATFSAIGKGFVARSMGFVNTAGPDGHQAVALRVQSDMSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTIDFIFGDSTTVIQNSLIIVRRPNDKQQNTVTAQGKTEKRETTGLVIHDCRIVPEQKLFPDRFKIPSFLGRPWKPYSKTIIMETTLGDFIQPAGWTPWAGKFVPNTLLYAEYGNLGPGANTHSRVTWKGYRIIKTRNEALQYTVNSFIQGNLWLKQINIPYLPGLKR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0578 814 FunFam Pectinesterase 1 257 - -
Vvi7g0578 814 Pfam Pectinesterase 1 239 IPR000070 GO:0030599|GO:0042545
Vvi7g0578 814 Pfam Pectinesterase 501 798 IPR000070 GO:0030599|GO:0042545
Vvi7g0578 814 FunFam - 292 447 - -
Vvi7g0578 814 Gene3D - 495 812 IPR012334 -
Vvi7g0578 814 Gene3D - 1 255 IPR012334 -
Vvi7g0578 814 PANTHER PECTINESTERASE 266 802 - -
Vvi7g0578 814 ProSitePatterns Pectinesterase signature 2. 92 101 IPR033131 -
Vvi7g0578 814 CDD PMEI-like_3 297 447 - -
Vvi7g0578 814 Gene3D Invertase/pectin methylesterase inhibitor family protein 292 447 IPR035513 -
Vvi7g0578 814 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 293 447 IPR035513 -
Vvi7g0578 814 SUPERFAMILY Pectin lyase-like 1 238 IPR011050 -
Vvi7g0578 814 SMART PMEI_2 290 442 IPR006501 GO:0004857
Vvi7g0578 814 ProSitePatterns Pectinesterase signature 2. 645 654 IPR033131 -
Vvi7g0578 814 FunFam Pectinesterase 495 812 - -
Vvi7g0578 814 SUPERFAMILY Pectin lyase-like 500 811 IPR011050 -
Vvi7g0578 814 Pfam Plant invertase/pectin methylesterase inhibitor 294 442 IPR006501 GO:0004857
Vvi7g0578 814 NCBIfam pectinesterase inhibitor domain 291 445 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0578 Vvi-Chr7 5028603 5032129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0578 242 812 Carbohydrate Esterase AT3G05610 42.561 3.02e-160 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0578 K01051 - vvi:100241799 1125.54