Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0576 ATGGATGATTTTCCAAATGTTTTGTGTGAATGGAGTTGGGAGGAGAACAAGTCGTTTGAGCTAGCTCTGGCAGTGGTGGATGAACGAGACCCAGATCGGTGGAAGGTCGTGGCAGCCATGGTGGGAGGGAAGAGTGCGGAGGAGGTTGAGAAACATTATGTTATTCTCTTGCAGGATTTGCAGTTCATCGAGTCTGGTGAAATGGATCATAAACTGGGTGAGGCTCAGCCCTGCGTTCAACTCGAGTGTTGGACCGACCAAGATCACAAGGAAAAAAGGAATATTACATTTCCACCTCTTAACTGA 306 0.4739 MDDFPNVLCEWSWEENKSFELALAVVDERDPDRWKVVAAMVGGKSAEEVEKHYVILLQDLQFIESGEMDHKLGEAQPCVQLECWTDQDHKEKRNITFPPLN* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0576 101 SMART sant 7 59 IPR001005 -
Vvi7g0576 101 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 10 71 IPR044636 GO:0003700
Vvi7g0576 101 CDD SANT 10 57 IPR001005 -
Vvi7g0576 101 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Vvi7g0576 101 Gene3D - 10 56 - -
Vvi7g0576 101 FunFam Transcription factor SRM1 6 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0576 Vvi-Chr7 5013644 5015215 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi7g0576 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0576 - - vvi:100250300 194.126