Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0571 ATGAACAAAACCGCCAAAAGGACACAATTTGCTTTATTTATCCTGAACATGTTACTTAAGCCTATAAGGGTCTTTAGGTTTTCTTTTTCAAATTTTGTTTTTGTTCAGGTAGGGAAATTTATACAGCTGGTATCGACTTTCATTGGAGGCTTTATCATAGCATTCATTAAAGGGTGGCTGCTTACCCTTGTCATGCTATCATCAATTCCTCTTCTTGTGATAGCTGGTGGAGCTATGTCTCTCTTCTTATCCAAGATGGCGACCCGCGGACAAAACGCTTATGCAAAAGCAGCAACTGTAGTAGAACAGACAATCGGCTCAATTAGAACAGTTGCATCATTTACTGGGGAAAAGCAAGCTGTAACTAAATACAATCAGTTTCTGGTAAATGCTTACAAATCAGGTGTTTTCGAAGGTCTGGCTGCAGGATTAGGCCTTGGAACAGTTATGTTCATCATCTTTGCAAGTTATGCATTGGCAGTATGGTTTGGTGCAAAGATGATACTGGAAAAAGGATATACTGGGGGTACAGTTCTGAATGTCATTATTGCCGTATTGACTGGTTCCATGTCTCTAGGGCAGGCATCTCCTTGCATGAGTGCATTTGCTGCTGGACAGGCTGCAGCATTCAAGATGTTTCAGACGATACACAGGAAGCCAGAGATAGATGTTTCTGACACCAAAGGGAAGAAATTGGAGGACATTCAAGGAGAGATAGAGTTAAGGGATGTATACTTTAGCTATCCAGCCAGACCAGATGAGCAAATCTTCAGTGGATTCTCTCTTTCCATCCCTAGTGGCACAACTGCAGCTTTGGTTGGACAGAGTGGAAGTGGGAAGTCAACAGTAATTAGTCTGATAGAGAGGTTTTATGATCCCCTTGCTGGTGAAGTTCTTATAGATGGTATTAATCTGAAGGAGTTTCAGCTTAGATGGATTAGGGGGAAAATTGGTCTTGTCAGCCAGGAACCAGTCTTGTTCACATCCAGCATTAGGGATAATATTGCATATGGAAAAGAGGGTGCAACTATTGAAGAGATAAGAGCTGCAGCTGAGCTAGCAAATGCTTCTAAATTCATTGATAAACTTCCTCAGGGGCTAGACACAATGGTTGGTGAGCATGGAACACAGCTCTCTGGAGGACAAAAGCAGAGAGTTGCCATAGCAAGAGCAATTCTGAAAGACCCGCGAATTCTACTTTTAGATGAAGCTACAAGTGCACTTGATGCAGAATCAGAACGAGTAGTACAAGAAGCATTGGACAGGATTATGGTCAACCGAACAACCATTATCGTTGCTCATCGTTTGAGTACAGTGAGGAATGCCGATATGATCGGTGTCATTCATCGTGGAAAGATGGTAGAAAAAGGCTCACACACTGAACTGCTCAAGGATCCTGAAGGAGCATACTCTCAGCTTATACGTTTGCAAGAAGTGAATAAAGAGTCTGAGAATCAAGCTACAGATTCCCAAGACAGACCAGATGGCAGCATTGAATTCGGTAGACAGTCAAGTCAACGAATGTCATTCTTGCGATCCATAAGTCGTGGATCATCAGGACCAGGAAATAGCAGTCGTCACTCATTCTCCGTCTCCTTTGGCCTACCTACAGGACTTGGCCTCCCTGATAATGCTATTGCAGATGCTGAAGCCCCTCGCTCATCAGAACAGCCTCCAGAAGTTCCAATCCGCCGCCTTGCCTATCTCAACAAGCCAGAGATCCCTGTGCTGTTACTAGGAACCGTAGCTGCCATCGTCAATGGCACCATTCTCCCAATATTTGGTATACTCATTTCCAGTGTTATCAAAACATTTTATGAGCCCCCACACCAACTCAGGAAGGATTCAAATTTTTGGGCATTAATATTTTTAGTCCTGGGTGTGGTATCATTCCTAGCATTCCCAGCAAGGACATACTTATTCTCTGTGGCTGGCTGTAAGTTGATACAGAGGGTCAGATCAATGTGCTTTGAGAAGGTGGTTCACATGGAGGTGGGTTGGTTCGATCAGCCTGAGCATTCAAGTGGAGCAATTGGTGCAAGGCTCTCTGCAGATGCTGCAACCATTCGAGCTCTAGTTGGAGACGCGCTTGCTCAGGTTGTTCAGAATGCTGCATCAGCAATTGCAGGTTTGGCCATTGCCTTTGCAGCAAGTTGGCAGTTAGCATTTATCATCCTTGCTTTGATACCTTTGATAGGACTTAATGGATATGTCCAGATAAAGTTCCTTAAGGGATTCAGTGCTGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTGGCTAATGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAAGTGATGGATCTGTACAAAAAGAAATGTGAAGGCCCTATGAGAACAGGGATAAGGCAAGGGCTGGTCAGTGGGATAGGCTTTGGAGTTTCTTTCTTCCTGCTGTTCTGTGTCTATGCACTCTGTTTCTATGCAGGAGCCCGGCTTGTTGAAGCTGGAAAAACAACATTTGGAGATGTTTTTCGTGTTTTCTTTGCTCTGACCATGGCTACCGTTGGAATTTCTCAATCAAGTTCCTTCAGTCCTGATTCCAGCAAAGCCAAGTCTGCTGCAGCTTCCATCTTTACAATTATAGACAGGAAGTCCACAATCGACCCCAGCGACGAGTCTGGTACAAAATTAGAGAATGTGAAGGGCGAGATTGAGCTTCGGCACATAAGCTTTAAGTATCCAACTAGACCAGATATTCAGATTTTCAGAGACCTCAGCTTGACCATCCGTAGTGGCAAGACAGTGGCCTTGGTAGGAGAAAGTGGGAGTGGAAAATCAACAGTCATCGCCTTGCTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTGGATGGTGTGGACATTCAAAGCCTCCAGTTGAGGTGGTTGAGGCAGCAGATGGGTCTAGTGAGCCAAGAACCGGTCTTGTTCAATGACACCATCCGTGCCAACATTGCATATGGAAAGGAAGGCCATACCACTGAAGCAGAAGTTATAGCTGCATCAGAGCTGGCAAACGCCCACAAGTTCATTAGCGGATTACAACAGGGGTATGACACCATGGTGGGAGAGAGAGGAATCCAACTATCAGGTGGGCAAAAGCAGAGAGTAGCCATTGCAAGAGCTATGGTGAAGAGCCCAAAGATACTGCTACTGGATGAGGCGACCAGTGCACTAGATGCTGAGTCTGAGCGGGTGGTACAAGATGCATTAGACCGAGTCATGGTGAACAGGACCACAGTGGTGGTAGCCCATCGGTTATCCACAATCAAGGGTGCTGATGTTATAGCCGTGGTGAAAAATGGAGTCATAGTTGAGAAGGGAAAGCATGAAACTCTGATAAACATCAAAGATGGGTTTTATGCCTCCTTAATAGCACTTCACATGAGCGCTTCCTCTTAA 3432 0.4473 MNKTAKRTQFALFILNMLLKPIRVFRFSFSNFVFVQVGKFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQNAYAKAATVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFIIFASYALAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKMFQTIHRKPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYGKEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGKMVEKGSHTELLKDPEGAYSQLIRLQEVNKESENQATDSQDRPDGSIEFGRQSSQRMSFLRSISRGSSGPGNSSRHSFSVSFGLPTGLGLPDNAIADAEAPRSSEQPPEVPIRRLAYLNKPEIPVLLLGTVAAIVNGTILPIFGILISSVIKTFYEPPHQLRKDSNFWALIFLVLGVVSFLAFPARTYLFSVAGCKLIQRVRSMCFEKVVHMEVGWFDQPEHSSGAIGARLSADAATIRALVGDALAQVVQNAASAIAGLAIAFAASWQLAFIILALIPLIGLNGYVQIKFLKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMDLYKKKCEGPMRTGIRQGLVSGIGFGVSFFLLFCVYALCFYAGARLVEAGKTTFGDVFRVFFALTMATVGISQSSSFSPDSSKAKSAAASIFTIIDRKSTIDPSDESGTKLENVKGEIELRHISFKYPTRPDIQIFRDLSLTIRSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGVDIQSLQLRWLRQQMGLVSQEPVLFNDTIRANIAYGKEGHTTEAEVIAASELANAHKFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAMVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKGADVIAVVKNGVIVEKGKHETLINIKDGFYASLIALHMSASS* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0571 1143 Gene3D - 889 1142 IPR027417 -
Vvi7g0571 1143 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 239 475 IPR003439 GO:0005524
Vvi7g0571 1143 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 578 864 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi7g0571 1143 FunFam ABC transporter B family member 1 557 865 - -
Vvi7g0571 1143 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 899 1136 IPR003439 GO:0005524
Vvi7g0571 1143 CDD ABC_MTABC3_MDL1_MDL2 239 477 - -
Vvi7g0571 1143 ProSitePatterns ABC transporters family signature. 1039 1053 IPR017871 GO:0005524|GO:0016887
Vvi7g0571 1143 ProSitePatterns ABC transporters family signature. 378 392 IPR017871 GO:0005524|GO:0016887
Vvi7g0571 1143 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 28 204 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi7g0571 1143 FunFam ABC transporter B family member 9 866 888 - -
Vvi7g0571 1143 Gene3D - 237 490 IPR027417 -
Vvi7g0571 1143 CDD ABC_MTABC3_MDL1_MDL2 899 1135 - -
Vvi7g0571 1143 Gene3D ABC transporter type 1, transmembrane domain 36 873 IPR036640 GO:0005524|GO:0016020
Vvi7g0571 1143 PANTHER ABC TRANSPORTER B FAMILY 31 480 IPR039421 -
Vvi7g0571 1143 FunFam ABC transporter B family member 1 889 1139 - -
Vvi7g0571 1143 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 200 - -
Vvi7g0571 1143 Pfam ABC transporter 259 406 IPR003439 GO:0005524
Vvi7g0571 1143 SUPERFAMILY ABC transporter transmembrane region 559 883 IPR036640 GO:0005524|GO:0016020
Vvi7g0571 1143 MobiDBLite consensus disorder prediction 480 502 - -
Vvi7g0571 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1136 IPR027417 -
Vvi7g0571 1143 SUPERFAMILY ABC transporter transmembrane region 30 221 IPR036640 GO:0005524|GO:0016020
Vvi7g0571 1143 Coils Coil 473 493 - -
Vvi7g0571 1143 FunFam ABC transporter B family member 1 229 478 - -
Vvi7g0571 1143 Pfam ABC transporter transmembrane region 30 190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi7g0571 1143 Pfam ABC transporter transmembrane region 577 849 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi7g0571 1143 SMART AAA_5 926 1119 IPR003593 GO:0016887
Vvi7g0571 1143 SMART AAA_5 266 438 IPR003593 GO:0016887
Vvi7g0571 1143 CDD ABC_6TM_Pgp_ABCB1_D2_like 567 882 - -
Vvi7g0571 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 477 IPR027417 -
Vvi7g0571 1143 Pfam ABC transporter 918 1067 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0571 Vvi-Chr7 4974456 4979419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0571 556 1141 Calmodulin-binding Proteins AT2G36910 39.597 1.85e-133 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0571 K05658 - vvi:100267452 2062.73