LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0561	ATGGACAAGCCACGCCCTGAATTCGCATTTTTACGCTCCGACGACTTTCTCCGACCGAATTCCAGCGTCCACGAAACTGTCTCGACGGATCAGAAACAGCCCATCAAGGAGATGGACTTCTTCTCCAGGAATAATCAACATAATCAGCCAAATGAGCAGGAGAGCAACCGTGGATCGTCCACTCGGACTGAGGCTGCAGCAGGCGTAAACACCGGATTGGATCTGCTGAGTTTGAATACTGGAATCCAAAGATCGGGAAATGATAATCTCAATATTCGACCAAAAACTGAGTTCGACACACTCCAAGTAGAATTGGAGAGAGTGAGAGATGAGAATCGGAAGCTGAGAAGCATGTTGGAACAGATTACCAAAAGTTACGGTGATCTCCAAGGCCAACTGCTTATGGCCATGGGAGAAGCAGCCAGACTGAAGAAGGATGATACAACTTGCAAGCCAGGGACCAGACAGTTGATGGACCCACGGCCATCCGGTGGATTAGATATTAATGAAGCTTCCGTATCGGATGAGAAGAACCAAGAAGGGTCAGTTTCTCCAGCTAATACTACGGAGGTGATGTCAAATGAAAGTGAACATCACAAGATTCCAAGTGCCGGGAAGAAAACTTGTTTTGGAGATGGTCCTGATCAAGGGTCGACCCACAGCTGGGGTTCCCCTAAAAGCCCAACAGTACTAGATCCATCAAAGAGTGAAGAGCAAGCTTCGGAGGTCCCTTTCAGGAAGGCAAGAGTGTCCGTACGAGCAAGATCCGAAGCTCCTTTGATAAGCGATGGATGTCAATGGAGGAAATATGGACAAAAGATGGCCAAGGGTAACCCTTGCCCTCGTGCCTACTATCGATGCACCATGGCCGCTGGATGCCCGGTTCGAAAGCAGGTTCAAAGATGTGCTGAGGACAAGACCATTCTCATAACAACTTATGAGGGAAATCATAATCACCCTCTCCCTCCAGCAGCTACAGCCATGGCAAATTCAACATCAGCAGCAGCAGCCATGCTACTATCAGGTTCAAATACTAGCAAGGAAGCGCTAGTAAATTCTGCAGGCTTCTTCCATCCTATGCCCTATTTATCAACCATGGCCAGCCTATCCGCCTCTGCACCATTTCCCACCATCACCCTCGACTTGACGCAAGGCACCAATCCCATGCACTTCCATCGAGGCCCCCCTTCTTCCACCTCGTTTCCTTCTCCTTTGCATGCTTGCCCACAACTCATAGGGCAACCCTTGTACGCCCCTCCCAAGATTCCCGTCCTGCCATCAGCTCAAATGGGGCATCGACATCCTAGCATGGTCGAGACGGTTACTGCAGCCATCACATCTGACCCTAACTTCACCGCAGCCCTAGCTGCAGCCATCTCCACAATTATCGGAGCACCAAGGAGCAGTTATGGCAACACCCCGAACAGCCATGGTGAGAACAGCAAACCCTTTTCCGGGATGCCTGCATTGCCAGGGTCCCCCCAGCTCCCTCAATCCTGTACCACCTTCTCCACCAATTAG	1521	0.5043	MDKPRPEFAFLRSDDFLRPNSSVHETVSTDQKQPIKEMDFFSRNNQHNQPNEQESNRGSSTRTEAAAGVNTGLDLLSLNTGIQRSGNDNLNIRPKTEFDTLQVELERVRDENRKLRSMLEQITKSYGDLQGQLLMAMGEAARLKKDDTTCKPGTRQLMDPRPSGGLDINEASVSDEKNQEGSVSPANTTEVMSNESEHHKIPSAGKKTCFGDGPDQGSTHSWGSPKSPTVLDPSKSEEQASEVPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAMANSTSAAAAMLLSGSNTSKEALVNSAGFFHPMPYLSTMASLSASAPFPTITLDLTQGTNPMHFHRGPPSSTSFPSPLHACPQLIGQPLYAPPKIPVLPSAQMGHRHPSMVETVTAAITSDPNFTAALAAAISTIIGAPRSSYGNTPNSHGENSKPFSGMPALPGSPQLPQSCTTFSTN*	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	175	192	-	-
	Vvi7g0561	506	FunFam	probable WRKY transcription factor 31	246	323	-	-
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	492	506	-	-
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	146	246	-	-
	Vvi7g0561	506	SUPERFAMILY	WRKY DNA-binding domain	254	322	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	1	64	-	-
	Vvi7g0561	506	Gene3D	WRKY domain	246	323	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi7g0561	506	Pfam	WRKY DNA -binding domain	263	320	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	214	236	-	-
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	20	64	-	-
	Vvi7g0561	506	Coils	Coil	98	125	-	-
	Vvi7g0561	506	SMART	WRKY_cls	261	321	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi7g0561	506	ProSiteProfiles	WRKY domain profile.	256	322	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi7g0561	506	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	93	473	IPR044810	GO:0003700
	Vvi7g0561	506	MobiDBLite	consensus disorder prediction	470	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0561	Vvi-Chr7	4899951	4902695	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0561	5	506	WRKY Transcription Factor Family	AT4G01720	43.551	2.15e-95	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vvi7g0561		WRKY	1.7e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0561	-		-	vvi:100264000	1001.12