Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0559 ATGCTTTGGGTGTCTTTATTCACAATGGGTAGAGCTACAAACTCTTCATCATCATCTATTGACAGCAGCAGCCATCCAACTGTTTCATCTGCATCTTCTTTCCCCCGGCTCAAGAGAGACCTCAGCACAGATCTTAGCCTTGGGCTCAGCATTTCAACCTCTGATCACCATTACTGCCCTTCCACTCCAAGGGAGCAACAATCAGATTGGCCACCCATAAAGACTCTCCTCAGGAAGGCCCTGGCAGGAGAAGGAAACAAGTGCAATGATGCCACCTTCTTTGTGAAGGTATACATGGAAGGCATTCCAATTGGAAGAAAGCTCGATCTATTTGCGCACGACGGTTACCATGCCTTGATAAGGACTCTTGACCATATGTTCAGCACCACCATTCTCTGGGCTGAGGTGGATGGAGTTCTGCATTCTGAGAAATGCCATGTGCTAACATATGAAGACAAGGAAGGAGACTGGATGATGGTTGGGGATGTTCCTTGGGAGCTGTTCTTGACCACTGTAAAGAGATTGAAGATCACTAGGGTAGACAAATACTAA 552 0.4674 MLWVSLFTMGRATNSSSSSIDSSSHPTVSSASSFPRLKRDLSTDLSLGLSISTSDHHYCPSTPREQQSDWPPIKTLLRKALAGEGNKCNDATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMFSTTILWAEVDGVLHSEKCHVLTYEDKEGDWMMVGDVPWELFLTTVKRLKITRVDKY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0559 183 ProSiteProfiles PB1 domain profile. 92 182 IPR000270 GO:0005515
Vvi7g0559 183 FunFam Auxin-responsive protein 87 183 - -
Vvi7g0559 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 180 IPR003311 GO:0005634|GO:0006355
Vvi7g0559 183 MobiDBLite consensus disorder prediction 13 32 - -
Vvi7g0559 183 Gene3D - 86 183 - -
Vvi7g0559 183 SUPERFAMILY CAD & PB1 domains 90 177 - -
Vvi7g0559 183 Pfam AUX/IAA family 59 179 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0559 Vvi-Chr7 4888143 4888949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0559 96 177 B3 DNA Binding Superfamily AT4G23980 40.244 9.13e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi7g0559 AUX_IAA 7.5e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0559 K14484 - vvi:100241721 366.696