Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0555 ATGTCTGACCGTGATTTTGTGGAGCTTGTATGGGAGAATGGTCAGATTCTTACAAGAGTTCTGTCCAGTACTGGATCTCATGAGAATCACAGATGGTCCAGTTTTTCTTTACATGATTCTAAGGCTCAAGTGGAAGTAGGATGGGACACCTCCATGGTAAAGAGAGGAAGGTTATTGGACAAGGAATTTCCTGGACATACCAAGATGGATCCCCATCCCAACTATACCCGTCAGGATTCTCTTAAAAAGCACTGCCATACTGAACTATTGGCCAAATTCTCAGGTTCCATTCTAAACGATGAGGTTGCCTACACCATTAGTGGTCATGATGAACAACTTGTTCCTTCAGCTGACAATCAGAATTTTAAACAAGGCAATGCATGTAACCTTTTCAGTGGAGAACCTCAGCTTACTAGACCCAAAGGTGGCCAAATATGTGAGTCTTCTTTGCAACAATGGCAAGCTTCATCTCCATATATAAGATCAAGGGAGGGTTCAAGTAAGATCCCAGTATCAACCAGTGGATTGTCTAACTCGATGATGCGGCAGCCAGAGCAGGAGCAGGATGCTGACCCCGATAACAGAATGGGTTCGATGAACTTCTCCTATTTCTTAAAACTTGCAGCTCTCGATAAAGCCAAGGCTCAGAACATTGATGCTGCAAGAGCCACAACCAGCCCAGGCTTGTCAAGACTTAAGGAGTCGAAAAGTGACTATGCTAATGGCACCAACCCCTTCAGATTGAGGCCAATTGGGCCCCCAACCGGTTCAGTGACCCCCAAACTGTTGCCACAACCAGTTGCTTCGTCTTTAAAGGAACCACTCTCTAATGGGCATTGTAAAGCAGTTGGTCATGAAGTTGCCTTTGGGAATACTGCATCCGCTAATCAGATTCCTAAGCCCAACTCAAGCTTCGCAGCAAGCATAGTCAAGGGAAAGCCTTACGCTGAAAAATCTGTAGAACCATTGCTTGCATCTTCGTCTACATGCTCACGTGAAGCTTCAAATTATCCATCCTATTCTTTGAAGAGCAAATGCCAAGAGTCTGAGGAATCAGAACATCCAAGTCAAAGTTTTGAAGAAGAACCCAGAAGGGCAGAAGGAGCAATGTCTACTCGAGGAGGAAGTGCAGGCTCCAAGAGAAACCGTAGTGCAGAAGGTCACAGCCTATCAGAAAAGAGGCGAAGAGATAGGATCAACAAGAAGATGCGCTCGTTACAGGAACTCATACCCAATTGCAAAAAGGTGGACAAGATTTCGATACTTGATGAAGCCATTGATTATCTGAAGACACTTCAGCTTCAAGTGCAGGTCATGTCAATGGGAGCTGGGATGTGTATGGCTCCAGTGATGATACCTGCTGTATTGCAACAGATTCAAGCAGCACATTTGCCTCATTTCTCTCCCATGGGTATGGGAATGGGCATGGGCATGGGCATGGGATTGGGATTGGGATTGGGATTGGGATTGGGCTGCAGCCCAGAACAGTTCCCAAGTCCACCTATTTTGGGAGCCGCTGCTTTGTCTGGAATAGCAGGAACTGCACCTCAGATGCTTGGGCACCCAGGTCAAGTGCTTCCCATGTCATTATCAAGTGCACCCTTCATTCCTTTACACGCAGGGTCATTGACACAGTCAGTTCTAGTGCCCAGTGTCCCCAAGGATATCCACCCAGTAGAGCATCCGGGTTCTTCTCCATCTTCGAATTGA 1710 0.4643 MSDRDFVELVWENGQILTRVLSSTGSHENHRWSSFSLHDSKAQVEVGWDTSMVKRGRLLDKEFPGHTKMDPHPNYTRQDSLKKHCHTELLAKFSGSILNDEVAYTISGHDEQLVPSADNQNFKQGNACNLFSGEPQLTRPKGGQICESSLQQWQASSPYIRSREGSSKIPVSTSGLSNSMMRQPEQEQDADPDNRMGSMNFSYFLKLAALDKAKAQNIDAARATTSPGLSRLKESKSDYANGTNPFRLRPIGPPTGSVTPKLLPQPVASSLKEPLSNGHCKAVGHEVAFGNTASANQIPKPNSSFAASIVKGKPYAEKSVEPLLASSSTCSREASNYPSYSLKSKCQESEESEHPSQSFEEEPRRAEGAMSTRGGSAGSKRNRSAEGHSLSEKRRRDRINKKMRSLQELIPNCKKVDKISILDEAIDYLKTLQLQVQVMSMGAGMCMAPVMIPAVLQQIQAAHLPHFSPMGMGMGMGMGMGLGLGLGLGLGCSPEQFPSPPILGAAALSGIAGTAPQMLGHPGQVLPMSLSSAPFIPLHAGSLTQSVLVPSVPKDIHPVEHPGSSPSSN* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0555 569 CDD bHLH_AtPIF_like 383 445 IPR047265 -
Vvi7g0555 569 MobiDBLite consensus disorder prediction 157 185 - -
Vvi7g0555 569 PANTHER TRANSCRIPTION FACTOR PIF3 2 568 IPR044273 GO:0003700|GO:0006355
Vvi7g0555 569 MobiDBLite consensus disorder prediction 322 345 - -
Vvi7g0555 569 MobiDBLite consensus disorder prediction 322 398 - -
Vvi7g0555 569 MobiDBLite consensus disorder prediction 346 368 - -
Vvi7g0555 569 FunFam Basic helix-loop-helix transcription factor 378 441 - -
Vvi7g0555 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 452 IPR036638 GO:0046983
Vvi7g0555 569 Gene3D - 378 441 IPR036638 GO:0046983
Vvi7g0555 569 MobiDBLite consensus disorder prediction 157 196 - -
Vvi7g0555 569 MobiDBLite consensus disorder prediction 232 251 - -
Vvi7g0555 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 383 432 IPR011598 GO:0046983
Vvi7g0555 569 Pfam Helix-loop-helix DNA-binding domain 388 433 IPR011598 GO:0046983
Vvi7g0555 569 SMART finulus 389 438 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0555 Vvi-Chr7 4866937 4869037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0555 318 554 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 38.492 3.33e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0555 HLH 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0555 K12126 - vvi:100253874 1076.23