Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0552 ATGGGGAGGCACTCTTGTTGTTACAAGCAGAAGCTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGGTCTGCAAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGGTGGTCCCAAATCGCAGCACAGCTGCCTGGACGCACTGACAATGAAATAAAGAATTTGTGGAACTCTTGCTTGAAGAAGAAGCTCAGGCAGAGAGGCATTGACCCCAACACCCACAAACCCCTCTCTGAGGTTGAAAATAGAGAAGACAGCAACCCTCCCACCGACAGCCAGGACAAAGCTTCAGGAGTATCCAGTGAATTGAACCTCCTCAAGGTAGACAATTCAAAGCCAGAAGCGGCCTTGCTCGAGCAAAGATCGTCTTCAATCGCAACACGAGGCTATGGAATGGAAGTGGAAGGTTCTTCCAGCTCCAAGACAATAAACAGCAACAACAACAATAACAGCAACAGCAATTTGATGTCGCCCACACCCAACAAGGACTTCTTCCTAGATAGATTCATGATCTCTCACCAGGAAAACTCCACAGGCTGCCAACCATCAGATGTGGTGGGGTATTTGGCCCCTCAGCAATTGAATTACCCATCCAATGCTAGACTCTCAATTAACCCAACCCAACCTCTCTGGTTCTCTCAATCCAGCAAAACATTAGACATGAATTCTGAGTTCAGTTCCAATGCTGTATCCTCCGTTCTTTCATCTGTCACCAGCTCACTTCTCCCTTCACCTATGCCCTACAAGCCCTCCATTCCTTTTCACTCTGATAATCCTTCAATTCCCTCTTTCACTCTGAGTGGATCCCGTTTCTGGGATGCAGGTGCCTCCACCAACAGTAGCAATAGCAGCTCTGGCAGCAGTAGCAGCGCCGAGTTGCAGAGTAACAGCTCCTTCTTTGAGAACAGCATCTTCCCATGGGGATTGGCAGATTGTAGCACGTCAGACAAAGGAGCCCAAATCCATATCATAGAAAGCGAACCGGAGGATATCAAGTGGCCTGAATATCTCCAAAATCCATTTTTAATGGCAGCAGCTTTACAAAATCAAACCCCACAACCTTTATACAATGAGATAAAATCAGAAACGCACTTCATAACCGAGACGTCTAGTGCTATGTGGGCTCACAGCCAGCAGCAGCAAGAACATCTGCAAGCTCCGGATATCCAGAGACTCCCCGCAACCTTTGGACATATTTAG 1356 0.4727 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSLQEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENREDSNPPTDSQDKASGVSSELNLLKVDNSKPEAALLEQRSSSIATRGYGMEVEGSSSSKTINSNNNNNSNSNLMSPTPNKDFFLDRFMISHQENSTGCQPSDVVGYLAPQQLNYPSNARLSINPTQPLWFSQSSKTLDMNSEFSSNAVSSVLSSVTSSLLPSPMPYKPSIPFHSDNPSIPSFTLSGSRFWDAGASTNSSNSSSGSSSSAELQSNSSFFENSIFPWGLADCSTSDKGAQIHIIESEPEDIKWPEYLQNPFLMAAALQNQTPQPLYNEIKSETHFITETSSAMWAHSQQQQEHLQAPDIQRLPATFGHI* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0552 451 FunFam MYB transcription factor 68 140 - -
Vvi7g0552 451 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi7g0552 451 Gene3D - 69 141 - -
Vvi7g0552 451 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi7g0552 451 MobiDBLite consensus disorder prediction 186 210 - -
Vvi7g0552 451 CDD SANT 17 61 IPR001005 -
Vvi7g0552 451 Gene3D - 11 67 - -
Vvi7g0552 451 MobiDBLite consensus disorder prediction 119 152 - -
Vvi7g0552 451 PANTHER MYB DOMAIN PROTEIN 55 1 363 - -
Vvi7g0552 451 MobiDBLite consensus disorder prediction 119 142 - -
Vvi7g0552 451 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi7g0552 451 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi7g0552 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi7g0552 451 SMART sant 66 114 IPR001005 -
Vvi7g0552 451 SMART sant 13 63 IPR001005 -
Vvi7g0552 451 CDD SANT 69 109 IPR001005 -
Vvi7g0552 451 FunFam Myb transcription factor 11 67 - -
Vvi7g0552 451 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi7g0552 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0552 Vvi-Chr7 4830483 4832062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0552 1 450 MYB Transcription Factor Family AT1G09540 44.420 6.04e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g0552 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0552 K09422 - vvi:100247039 834.713