Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0548 ATGTCGGTTATGGCGGTGGGGGTTGTAGCAGTGGCGTGGTGTTTGTTTTTTGTGAATGGGCATGTGTTGGGGGAAGATGGTTTTCAAGGTTTGATGGATTTGGAGGAGATTCCCTCCCCAAATCCTCTCATGGTGGACCTCACTCTCATTCCAGGAGCTGCTGCTAGAGGAGCTGTTTGTTTGGATGGAACTCTACCTGGTTACCATTTCCATCCCGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAGGGTGGGGGTTGGTGTAACAACATAAAATCTTGTGTTTTTCGCAAAACAACTCGCCGGGGTTCATCCAAATACATGGAAAAGACATTAGCCTTCACGGGAATACTAAGCAATAAAGCTGAAGAAAATCCTGATTTTTTCAACTGGAACAGAGTCAAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATAAGGCCACTGGACTTTATTTTCGAGGACAACGGATCTTTGAAGCTGGTATGGAGGAGCTAATGTCGAAGGGGATGAAGAATGCTGATCAGGCTCTTCTTTCTGGATGCTCTGCTGGGGGACTGGCGTCTATACTACATTGCGATGAGTTTGGCGATTTATTTCCTAAAACTACAAAAGTGAAATGCCTGAGTGATGCAGGGTTCTTCCTTGATGCAACCGATGCAGCTGGTGGGCACACCATGAGGAATTTGTATGCTGGTGTAGTTAGCTTACAGGGAGTAGAGAAGAACCTGCCAAGCACTTGTACCACCCGTTTAGATCCAACTTCGTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAGTTTCAGGAAAGTTTAGTTCCATCAAGTGCTGATCCCCATGGTGAATGGAAGGGATGCAAATTAAATCATGTCAATTGTAATTCAACACAGATCCAGTTTCTCCAAGATTTCAGGATGGAAATGCTTGATGATGTCAAAGGTTTTGCAAGGGATGATCAAAATGGGCTCTTCATAAATTCGTGCTTTGCTCACTGCCAGACTGAGTTACAGGATACATGGTTTGCTGATGACTCTCCTTTTCTTGGAAAAAGGAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCTTCAAGTATGTCTTGGGGGAAGATGATTTTCAAGGTTTGTTGGATTTGGAGGAGACTCCCTCCCCAAATCCTCTCATGGTGGACCTCACTCTCATTCCAGGAGCTGCTGCTAAAGGAGCTGTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAGGGTGGGGGTTGGTGTAATGACATAAAATCTTGTGTTTTTCGCAAAGCAACTCGCCGGGGTTCATCCAAATACATGGAAAAGACATTAGCCTTCACGGGAATACTAAGCAATAAAGCTGAAGAAAATCCTGATTTTTTCAACTGGAACAGAGTCGAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATGAGGCTGCTGGACTTTACTTCCGAGGACAACGGATCTTTGAAGCTGGTATGGAGGAGTTAATGTCAAAGGGGATGAAGAATGCTGATCAGGCTCTTCTTTCTGGATGCTCTGCTGGGGGGCTGGCGTCTATACTACATTGCGATGAGTTTGGCGGTTTATTTCCTGAAACTACAAAAGTGAAATGCCTGAGTGATGCAGGGTTCTTCCTTGATGTAACCGATGCAGCTGGTGGGCACACCATAAGGAATTTTTATGCTGGTGTAGTTAGCTTACAGGGAGTAGAAAAGAACCTGCCAAGCACTTGTATCAGCCGTTTCGATCCAACTTCGTGCTTCTTCCCTGAGAACTTGGTCGACAACATTAAGACCCCGCTCTTTCTGCTCAATGCAGCCTACGATACATGGCAGTTTCATCAAAGTTTAGTTCCATCAAGTGTTGATCCCCATGGTGAATGGAATGCATGCAAATCAAATCAATCCAATTGTAATTCAACACAGATCCAGCTTCTCCAAGGTAATTTCCTCATTTTCTTTCCATCTTTCCATGTCCCTGGCATATAA 2184 0.4519 MSVMAVGVVAVAWCLFFVNGHVLGEDGFQGLMDLEEIPSPNPLMVDLTLIPGAAARGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNNIKSCVFRKTTRRGSSKYMEKTLAFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGEGQNKATGLYFRGQRIFEAGMEELMSKGMKNADQALLSGCSAGGLASILHCDEFGDLFPKTTKVKCLSDAGFFLDATDAAGGHTMRNLYAGVVSLQGVEKNLPSTCTTRLDPTSCFFPENLIDNIKTPLFLLNAAYDAWQFQESLVPSSADPHGEWKGCKLNHVNCNSTQIQFLQDFRMEMLDDVKGFARDDQNGLFINSCFAHCQTELQDTWFADDSPFLGKRKIAESVGDWYFDRRPVKAIDCPYPCDNTCHNLVFKYVLGEDDFQGLLDLEETPSPNPLMVDLTLIPGAAAKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNDIKSCVFRKATRRGSSKYMEKTLAFTGILSNKAEENPDFFNWNRVELRYCDGASFSGEGQNEAAGLYFRGQRIFEAGMEELMSKGMKNADQALLSGCSAGGLASILHCDEFGGLFPETTKVKCLSDAGFFLDVTDAAGGHTIRNFYAGVVSLQGVEKNLPSTCISRFDPTSCFFPENLVDNIKTPLFLLNAAYDTWQFHQSLVPSSVDPHGEWNACKSNQSNCNSTQIQLLQGNFLIFFPSFHVPGI* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0548 727 PANTHER NOTUM-RELATED 19 404 IPR004963 GO:0016787
Vvi7g0548 727 Pfam Pectinacetylesterase 429 713 IPR004963 GO:0016787
Vvi7g0548 727 Pfam Pectinacetylesterase 41 387 IPR004963 GO:0016787
Vvi7g0548 727 SUPERFAMILY alpha/beta-Hydrolases 452 676 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0548 Vvi-Chr7 4796887 4810599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0548 410 712 Carbohydrate Esterase AT2G46930 67.213 4.55e-148 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0548 K19882 - vvi:100252196 856.67