Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0545 ATGGCTTCCGCATTTTCTTCTTGCTCTGTTTTCCAGGCCGTCTTCAGCAAAGATATCCCCAGTTTGCCAAGGAGGCCTGTGGTTTCTTGTATTGGAAAGACCCCAACTTTAAGCTGCCATGGGCGAGGCTTGGCGTCAAAATCTCATTATGCCTCTTGTTTTTCTATCACACCACTTTCTAAAGTAAATTCAGCTGGTCACCGAAGATTGATGTGTGTTAACTCTATGGCTAATGAGGTAGAGCTGCAAGCGAAAGTGACAACCAAATGCTTCTTTGATGTAGACATCGGGGGTGAACCTGTAGGTAGGATAGTAATTGGCCTCTTTGGAGAAGTAGTTCCAAAGACTGCTGAGAACTTCCGCGTCTTATGTACAGGAGAGAAAGGATACGGTTACAAAGGATGCTCTTTCCATCGTATTATTAAAGATTTCATGATCCAAGGAGGGGATTTCACTGAGGGAGATGGAACGGGAGGAATCAGTATCTATGGCTCTAGTTTTGAAGATGAGAACTTTGCCTTGACTCATGTTGGACCTGGGGTATTGAGCATGGCCAATGCTGGTCCCAATACCAATGGCAGTCAATTTTTCATTTGCACTGTAAAGACTCCATGGTTGGACAGACGCCATGTTGTGTTTGGACATGTCATTGACGGAATGGATGTTGTGCGGAAGCTCGAGTCCCAAGAGACAAGCAGGTCAGATTACCCAAAGTTGACATGCAGAATTATAAATTGTGGGGAGTTGCCCATGGACAGCTGA 762 0.4514 MASAFSSCSVFQAVFSKDIPSLPRRPVVSCIGKTPTLSCHGRGLASKSHYASCFSITPLSKVNSAGHRRLMCVNSMANEVELQAKVTTKCFFDVDIGGEPVGRIVIGLFGEVVPKTAENFRVLCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDENFALTHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDRRHVVFGHVIDGMDVVRKLESQETSRSDYPKLTCRIINCGELPMDS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0545 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 94 247 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 132 149 IPR020892 GO:0003755|GO:0006457
Vvi7g0545 253 SUPERFAMILY Cyclophilin-like 85 249 IPR029000 -
Vvi7g0545 253 FunFam Peptidyl-prolyl cis-trans isomerase 76 253 - -
Vvi7g0545 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 149 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 208 223 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 195 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 207 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 91 248 IPR002130 GO:0000413|GO:0003755
Vvi7g0545 253 Gene3D - 77 253 IPR029000 -
Vvi7g0545 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 89 249 - -
Vvi7g0545 253 CDD cyclophilin_ABH_like 89 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0545 Vvi-Chr7 4770542 4773262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0545 102 246 U-box Gene Family AT5G67530 46.575 1.78e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0545 K03768 - vvi:100250386 517.694