Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0543 ATGGGGAATAGCACTTCTCGAGTTGTCGGGTGCTTTGTGCCCTTCAATGGAAAAGGTGGTGTTGACTTAGACTTACTGGAGCCACTGGATGAAGGACTAGGCCATTCCTTCTGTTATGTTAGACCCATGATTCTCGACTCTCCTGCTATTACCCCATCAAACTCTGAGAGGTTTACTGTTGATTCGAGCACCCTTGATTCAGAAACATTGAGTGGTTCCTTTCGGCATGAGAATATAGATGATCCCTCGGCTGTACACCGACCCAACAAGTGTTTCCCAGAAACCACATTTAAAGCCATTTCAGGGGCATCAGTGAGTGCCAATGTTTCTACGGCTCGAACTGGAAACTCCAATGCATTGTTTACAAGTGATGCCCAAGAACCTGCTGCATCATTTGAAAGCACATCCTCATTTGCTGCAATACCTTTGCAGCCAGTACCTCGTGGGTCTGGACCTCTGAATGGATTTATGTCTGGTCCTCTCGAGAGAGGTTTTGCTTCAGGTCCTTTGGAGAGGGGAGGTGGTTTTATGTCTGGGCCCATTGAAAAAGGAGTAATGTCGGGTCCTTTGGATGCTACGGACAAATCCAACTTCTCGGCACCGCTTGCACATGGTCGTAGAAGGCCAGGCCTCCAACGATTGATGAGGAGTGTGAGTGGGCCAATGAAAAGCACCCTGTCCCGAACCTTCTCTAGACATTCAATTGGATCCAGTTGGATGCAACGGTTTTTCTTGCACCCAGTCACTCAATTTGCATGGCATCCTAGGGAGCCAAAGTTCCGGCCGGAGGCTCCACGAAACTGTCTTGATGTGGGGCCATCGGAAGGGGAGTATAGGAAAACTCACAATTTGCAATGGGCTCATGGCAAGGCTGGTGAGGATAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGATGGTTGTTTATTGGAATATATGATGGTTTTAGTGGCCCAGATGCACCGGATTTTTTGATGAGCCATCTGTATAAAGCTATAGACAAAGAATTGGAAGGACTGCTTTGGGATTATGAGGAAAAGTCTGTGAATGATCTGCTGAATCTTGAACTCCCCATGAATAGGGATGCTACAGTTGATTCTGAATGCGGAAAGGATAACCATCCGATTTCCCAGTTAAATGAAGTAATTTCTGGTACTTTAGAAGAATCATGCAACCCAGGAACTATCAGGGATCACTGCTCTAACTGTGAGATAGTTGAAGAAAAAGATGGAGTGAGGGGGGTTCTTGAATTGCAATCTAGTTGTGGAAAGCCTGGTGTCTTGGGTGTAGAATCCATTGCTGCGCCAACTGCAAACTTAACTGGTCAAGGGAGGAAAAGCAAGCGACTTTATGAACTACTTCAGATGGAATCATGGGATGGAGAAAGTTCACTTTCAGTTTCTGAGGGCGGAAACCAAAGAAGGGGTTCATGGGATTGGCAGCCAAGTTCAGATGTTTTGCATTCCAGGGGAATTTTACAAGAAGAACAACTCAGGTCATGCTCAGTGACCAGCACAAAAGGAGATAGTTCTAGCCAGTACTGTGAAGATCCCACCACTTCAGGAGAAAATGGCGGGATCAGGATGGAATCTAATAGCGTTCTAGCCCCTCTCTCTGTTTCAGAGCAAAGGCAGGGTATGAGAAAGTCCCTTATCAGTTCTAAGATTCGAAAAATGTACCGGAAACAGAAGTCCTTGCGTAAGAAACTGTTCCCTTGGAGTTATGATTGGCACAGGGAGGAGACTTGTGTTGATGATAGGATGGCTGAAACCTCGGGACCTGTCAGGAGATGCAAATCAGGAGTTATTGATCATGATGCAGTCTTGAGGGCAATGGCTCGAGCACTTGAAACCACTGAGGAGGCTTACATGGAAATGGTGGAAAAAGCTCTTGACAAAAACCCAGAGCTTGCTTTGATGGGTTCTTGTGTTTTAGTGATGTTAATGAAGGATCAAGATGTGTATGTCATGAACCTTGGGGATAGCCGTGTGATCCTGGCACAGGAGAGGCCAAATGATCGCCACCCTAACCCAAATCTTGCAAAGGATGATGTGAGGCATCGGAATAGGTCCCGAGAGTCACTTGTACGCATGGAACTTGATAGAATATCTGAGGAGTCTCCTATGCATAACCAGAACTGTCAAGTTAACAAGGCAAATAAGAACAGAGAGATCTCCTTTTGCAGATTAAAAATGAGGGCGGTTCAGCTTTCCACTGATCACAGCACAAGTATTGAAGAGGAAGTATTGAGGATAAAAGCAGAACATGTTGATGACAATCAAGCCATTTTGAATGATAGAGTGAAAGGGCAGTTAAAAGTCACCAGAGCATTTGGTGCAGGGTTTCTTAAGGAGCCAAAATGCAATGAAGCTCTTCTGGAGATGTTTCAGATTGATTATGTGGGAACCACTCCATATGTCAGTTGCATCCCTTCAGTCCTTCATCACCGACTCTCTTCAAGTGATCGATTCTTGGTACTCTCCTCTGATGGGCTTTACCAGTACTTCAGCAATGAAGAGGTTGTTGCCCATGTCACATGGTTCATGGAAAATGTCCCAGAAGGTGATCCTGCACAATACCTCATTGCGGAGCTTCTCTTTCGTGCTGCAAAAAAGAATGGAATGGATTTCCATGAATTGCTTGATATTCCCCATGGAGATAGACGTAAATATCATGACGACGTTTCTGTTATGGTGGTTTCCCTCGAGGGAAGGATCTGGAGATCATCAGGATAG 2733 0.4548 MGNSTSRVVGCFVPFNGKGGVDLDLLEPLDEGLGHSFCYVRPMILDSPAITPSNSERFTVDSSTLDSETLSGSFRHENIDDPSAVHRPNKCFPETTFKAISGASVSANVSTARTGNSNALFTSDAQEPAASFESTSSFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLERGGGFMSGPIEKGVMSGPLDATDKSNFSAPLAHGRRRPGLQRLMRSVSGPMKSTLSRTFSRHSIGSSWMQRFFLHPVTQFAWHPREPKFRPEAPRNCLDVGPSEGEYRKTHNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYKAIDKELEGLLWDYEEKSVNDLLNLELPMNRDATVDSECGKDNHPISQLNEVISGTLEESCNPGTIRDHCSNCEIVEEKDGVRGVLELQSSCGKPGVLGVESIAAPTANLTGQGRKSKRLYELLQMESWDGESSLSVSEGGNQRRGSWDWQPSSDVLHSRGILQEEQLRSCSVTSTKGDSSSQYCEDPTTSGENGGIRMESNSVLAPLSVSEQRQGMRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREETCVDDRMAETSGPVRRCKSGVIDHDAVLRAMARALETTEEAYMEMVEKALDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRVILAQERPNDRHPNPNLAKDDVRHRNRSRESLVRMELDRISEESPMHNQNCQVNKANKNREISFCRLKMRAVQLSTDHSTSIEEEVLRIKAEHVDDNQAILNDRVKGQLKVTRAFGAGFLKEPKCNEALLEMFQIDYVGTTPYVSCIPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0543 910 MobiDBLite consensus disorder prediction 669 688 - -
Vvi7g0543 910 ProSiteProfiles PPM-type phosphatase domain profile. 277 901 IPR001932 -
Vvi7g0543 910 SMART PP2C_4 277 899 IPR001932 -
Vvi7g0543 910 PANTHER PROTEIN PHOSPHATASE 2C 280 900 IPR015655 GO:0004722|GO:0006470
Vvi7g0543 910 MobiDBLite consensus disorder prediction 499 527 - -
Vvi7g0543 910 MobiDBLite consensus disorder prediction 461 481 - -
Vvi7g0543 910 SUPERFAMILY PP2C-like 290 902 IPR036457 -
Vvi7g0543 910 CDD PP2Cc 603 901 IPR001932 -
Vvi7g0543 910 Gene3D - 266 404 IPR036457 -
Vvi7g0543 910 Gene3D - 536 907 IPR036457 -
Vvi7g0543 910 Pfam Protein phosphatase 2C 727 872 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0543 Vvi-Chr7 4745380 4752076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0543 1 910 PP2C-type Phosphatase Gene Family AT2G46920 64.667 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0543 - - vvi:100262441 1830.84