Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0536 ATGGATAGGCTCTGTGTATTTAGCAGCATTGTTCTCTTTCTGGGGGTGCTCACAGGGACAACACTTAGAGGAGCATCAGCTGCTTGGCTCCAAGCCCATGCAACCTTTTATGGTGGAAGTGATGCTTCAGGAACTATGGGTGGTGCATGTGGTTATGGCAATCTTTACAGCGATGGTTATGGAGTAAAGACTGCAGCGCTGAGCACGGCTTTGTTCAACAATGGCAAGGCATGTGGTGGCTGCTATCAGATTGTGTGTGACGCAACCAAGGTGCCCCAGTGGTGCCTCAAGGGCACATCTATTACCATCACCGCTACCAACTTCTGCCCACCGAATTACGCTCTCCCTAGTGATAATGGCGGGTGGTGCAATCCTCCAAGGCCTCACTTTGACATGTCTCAACCTGCTTTCGAGTCTATAGCAAAATACAGGGCTGGAATTGTACCAATTCTTTATAGGCAAGTTCGATGCAAGAGAAGCGGAGGCATGAGGTTCACCATAAATGGAAGGGATTACTTCGAGCTAGTTCTGATATCCAATGTGGGAGGTGCTGGAGAAGTCTCTAAGGTATGGATAAAAGGGTCCAAAGCCAATAGCTGGGAAGCCATGACCAGGAACTGGGGCTCAAACTGGCAGAGCCTGAAATACCTGAACGGCCAGAGCTTGTCCTTTAGAGTCCAAAGCAGTGACGGGAAGACCCTCACAGCCCTCAATGTGGCACCTTCAAACTGGAAGTTTGGCCAGTCATTCACCACAAATGTTCAATTCTGA 771 0.4929 MDRLCVFSSIVLFLGVLTGTTLRGASAAWLQAHATFYGGSDASGTMGGACGYGNLYSDGYGVKTAALSTALFNNGKACGGCYQIVCDATKVPQWCLKGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFESIAKYRAGIVPILYRQVRCKRSGGMRFTINGRDYFELVLISNVGGAGEVSKVWIKGSKANSWEAMTRNWGSNWQSLKYLNGQSLSFRVQSSDGKTLTALNVAPSNWKFGQSFTTNVQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0536 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Vvi7g0536 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Vvi7g0536 256 CDD DPBB_EXPA_N 29 157 - -
Vvi7g0536 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vvi7g0536 256 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vvi7g0536 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vvi7g0536 256 PANTHER EXPANSIN-A15 13 252 IPR002963 GO:0009664
Vvi7g0536 256 Pfam Lytic transglycolase 64 152 IPR009009 -
Vvi7g0536 256 Gene3D - 163 256 IPR036749 -
Vvi7g0536 256 Gene3D - 19 158 IPR036908 -
Vvi7g0536 256 FunFam Expansin 162 256 - -
Vvi7g0536 256 FunFam Expansin 20 158 - -
Vvi7g0536 256 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Vvi7g0536 256 SUPERFAMILY Barwin-like endoglucanases 22 180 IPR036908 -
Vvi7g0536 256 SMART dpbb_1 64 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0536 Vvi-Chr7 4682986 4683933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0536 6 256 Expansin Gene Family AT4G01630 75.794 7.92e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0536 - - vvi:100248670 532.332