Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0535 ATGGGAGGGGATGGAAACGGTGGCACAGCGGCGCGTGCGACGCTCCCGGCCGAGCCGCAGTACGTGTCGGTAAAGACGTCGGTGTGGTGGGACATCGAGAACTGCCAGGTCCCCAAGGGCTGCGATCCACACGCCATCGCTCAGAACATCAGTTCCGCGCTGGCCAAGTTGTACTACAGTGGTCCAGTCTCCATCTCAGCCTATGGAGATACAAATCGCATCCCGGCTTCTGTGCAGCAGGCGCTCTCCAGCACCGGCATCGCTCTCAATCACGTCCCCGCCGGTGTGAAAGATGCAAGTGACAAGAAGATTTTAGTTGATATGCTGTTCTGGGCGGTGGATAATCCTGCCCCAGCTAATTATTTGCTGATTTCTGGTGATAGAGATTTTTCTAATGCTCTCCATCAGTTGCGAATGAGAAGATATAACATACTTCTAGCACAACCACAAAAAGCATCTGCTCCGCTAATTGCTGCAGCAAAGAGTGTATGGTTATGGACAAGCCTTGTTGCTGGAGGATTCCCACTAACAAGTGGTGAATCATCACAACTTGCTGATTGTAACAATGTGTTCAACCCTGAAATGTCTCAGTATCCAGTTCCCGAGACCATGCAAACAAGCCAGCCTGTGGATTCCAATTCTGATGGTCTTTCTGCAGGAACTCAGAAGTTTTTTTCTGCGGGGAGGGTTGGTGATACTAAATCCAAAGGGAAATTCATCCGGAAAATTGCAAATCAACCAAACATAACAAGAGCTTCAAGTGTGCTAGTTGGGATTCAGGAGAGCAACAGTTTCTCTCACCAACCAGAATATACACAGGGAAAGCAGTTTAAGAAAGCTCCTCATGAATTCTTTGGTGCTAGTGAGTCTGTAGTATCTGCAAATGGGTCTACTCCCAATTACTTTCAAGGGAATCCTGACTCTTCAGGGATCAATGGCAATAACTTCATTGGAAATCCACAAGATCACTATCCTCATCCTTTGAGGCCAAACAACATCCCTACGCAAGCTAGTTTTGCTTCAAATAATCTGTATCCACCAAATTCTTATAGCCATGGTTTTCGACCAATGCCTCCCAGATCTGAAGGTCCGAGATTTCCCTCGGCTCCACCTGCAAATGTGCCTGATATTAGCCGGCTAAGTATGTCTGAATACCCCAACTATGCTCAAAATCCTCCTAATTTTCATCAACGCATTGGAGGAGAGTACAAACCATACTCTAGCGAGTCTCCACACCCACCAGGTTTAAATGTACCACAGAAAGGCTATCTCCCACACACAAGTCAGCTGCTCTACCAGGATACTTCAAGCAATAGGTATCCTGGTGGTCCTGATTTGCCAGCCCATTCGTCCTCCCCAGTGGGTGCCAACTCTGTTTCCAGTAATGGTGTGTGGGGCTCACAAGGATGTCCACAACCATCTGAATATGTGCAAGGTCTTATAGGGGTTATTCTACTTACTTTAAACACCTTAAAAACTGAAAAGATTATGCCTACTGAAGTGAATATAAGCGATTGCATTCGTCATGGAGATCCAAAACATCAAAATACTGATGTGAGAAAGGCCCTGGAAAGTGCTGTTGAGCAGCAAATGGTAGTGAAGCAAAATTTAGGTGCAGTACAGTTGTATGTTGGTAAAAAAGAGAGATTATGGAAGTGTGTGAACCCTATAGGTGGTAATCCTAATCAATATCCAAAAGCAACATGGGATAGAATTCAAATGTTTTTAGCTACCTCTATAGGACGATCAGCAATAATGGCTTCTCAATGCAAGTATGAGGCAGCATTGATTCTTAGAAACAAGTGCTTAGAAGAGTTTGCTTTGGGTGATGTGCTCCAGATCTTGAATATGCTAAGCACAATGAAGAAATGGATTGTAAATCATCAGTCAGGATGGCAACCAATTAAAATTACTCTTGCAGAGACAAATACTGATATAAATACTGAAACTTCTGCTTGA 1959 0.4482 MGGDGNGGTAARATLPAEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAKLYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPLTSGESSQLADCNNVFNPEMSQYPVPETMQTSQPVDSNSDGLSAGTQKFFSAGRVGDTKSKGKFIRKIANQPNITRASSVLVGIQESNSFSHQPEYTQGKQFKKAPHEFFGASESVVSANGSTPNYFQGNPDSSGINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPMPPRSEGPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLNVPQKGYLPHTSQLLYQDTSSNRYPGGPDLPAHSSSPVGANSVSSNGVWGSQGCPQPSEYVQGLIGVILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNLGAVQLYVGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCKYEAALILRNKCLEEFALGDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINTETSA* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0535 652 MobiDBLite consensus disorder prediction 422 440 - -
Vvi7g0535 652 PANTHER LIMKAIN B LKAP 20 534 IPR024768 GO:0005777|GO:0010468
Vvi7g0535 652 MobiDBLite consensus disorder prediction 451 465 - -
Vvi7g0535 652 Pfam NYN domain 25 161 IPR021139 GO:0004540
Vvi7g0535 652 MobiDBLite consensus disorder prediction 396 465 - -
Vvi7g0535 652 Pfam OST-HTH Associated domain 589 644 IPR025677 -
Vvi7g0535 652 CDD PIN_limkain_b1_N_like 25 149 - -
Vvi7g0535 652 Gene3D - 22 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0535 Vvi-Chr7 4670467 4673720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0535 17 248 C2H2 Transcription Factor Family AT5G61190 64.407 3.06e-87 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0535 - - vvi:100253767 1330.08