Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0532 ATGAGTTGCTTTGGTTGTTGTGAAGATGATGACATCCATACAGCTCCTGAGAGTGGAAATCCATTCGCTGCAAAAAACCCAGCAGGAAATGATGGAGGTTATCGTCACACAGACCCTGCACCAAAGGGAACTCAAGCAGTTAAAGTCCAGCCTATTGCAGTCCCTCCCATTCCATTCGATGAACTGAAGGAAATTACAGATAACTTTGGAACAAGTGCTCTGATCGGAGAGGGCTCATATGGAAGAGTGTATTATGGGCTTCTGAAAAATGGGCAGGCTGCAGCAATCAAAAAATTAGATGCCAGCAAACAACCTGACGAGGAATTCTTAGCCCAGGTATCCATGGTATCAAGGCTGAAACATGACAATTTTGTTGAATTGATTGGTTATTGTGTTGATGGAGGTTCTCGTATTCTCGCCTATGAGTTTGCATCTAATGGATCTCTTCATGACATTCTTCATGGGAGGAAGGGAGTTAAAGGAGCACAACCTGGGCCCATTCTGTCATGGGCACAACGGGTAAAAATTGCAGTAGGAGCTGCAAGAGGGCTTGACTATCTGCATGAGAAGGCATCACCTCACATCATCCATCGTGACATTAAGTCCAGCAATGTGCTACTCTTTGATGATGATGTTGCTAAAATTGCTGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCAGCACGACTTCATTCCACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCTGAATATGCAATGACTGGACAGCTGAATGCAAAAAGTGATGTATATAGCTTTGGTGTTGTGCTGCTTGAGCTTCTGACAGGACGTAAACCTGTTGATCATACGTTACCTCGTGGGCAGCAGAGTTTAGTAACATGGGCTACACCAAAACTAAGTGAAGACAAGGTTAGGCAGTGTGTTGATACAAGACTAGGACAAGACTACCCTCCCAAGGCAGTTGCCAAGATGGCTGCTGTTGCTGCCTTGTGCGTGCAATACGAAGCTGATTTCCGGCCAAACATGAGCATTGTTGTTAAAGCTCTCCAGCCTCTATTAAATGCCCGGCCTGGACCTTCCGGTGAAGTACCAAACATGTGA 1089 0.4509 MSCFGCCEDDDIHTAPESGNPFAAKNPAGNDGGYRHTDPAPKGTQAVKVQPIAVPPIPFDELKEITDNFGTSALIGEGSYGRVYYGLLKNGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVELIGYCVDGGSRILAYEFASNGSLHDILHGRKGVKGAQPGPILSWAQRVKIAVGAARGLDYLHEKASPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGQDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPSGEVPNM* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0532 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vvi7g0532 362 PIRSF TyrPK_CSF1-R 311 353 - -
Vvi7g0532 362 PIRSF TyrPK_CSF1-R 40 163 - -
Vvi7g0532 362 PIRSF TyrPK_CSF1-R 159 278 - -
Vvi7g0532 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vvi7g0532 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0532 362 FunFam pto-interacting protein 1 145 356 - -
Vvi7g0532 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Vvi7g0532 362 MobiDBLite consensus disorder prediction 15 42 - -
Vvi7g0532 362 SUPERFAMILY Protein kinase-like (PK-like) 47 345 IPR011009 -
Vvi7g0532 362 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Vvi7g0532 362 CDD STKc_IRAK 75 348 - -
Vvi7g0532 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 5 351 - -
Vvi7g0532 362 Gene3D Phosphorylase Kinase; domain 1 36 143 - -
Vvi7g0532 362 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0532 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0532 Vvi-Chr7 4650916 4654036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0532 57 346 Receptor kinase-like Gene Family AT4G02010 50.680 5.55e-91 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vvi7g0532 PK_Tyr_Ser-Thr 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0532 K13436 - vvi:100265884 724.161