Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0531 ATGGAGGCTAAAATTGGGGGTGAAGCTCACCATTTCTATGGTATCGGGACTTCTGATTTGCGTGTGGTGGGGAAGAGGAGTTCGGAATGGGATTCGAATGAGTGGAAATGGGATGGTGATCTTTTCATAGCCAGTCCCATGAATCCAGTGCCCTCAGATTACACGAGCCAGCAATTTTTCCCACATGGCTCGGCAATTCCAGTGACTGGGGGTTCCTCTAACAGTTCTTCTTCGTGTTCTGATGAAGTGAATCTTGGAATTGAGAAAAGGAAAAGGGAATTGGAGAAACGTAGGAGGGTTATCGTTGTCCAAGACGACAATGATGAAACTGGGACTCTTTCTCTAAAGCTTGGTGGGCATGGACATTCGGTTTCTGAAAGGGAGGTGGGAAATTGGGAAGGGACAAGTGGGAAGAAGACCAAATTGGCTGGAGTTAGTTCCAGTCGCGCTGTTTGTCAGGTAGAGGACTGTGGGGCTGATCTAAGCAAAGCCAAGGATTATCACAGACGACATAAGGTCTGTGAGATGCATTCAAAGGCCGGTTGCGCCCTGGTGGGAAATGATATGCAACGATTCTGTCAGCAGTGTAGTAGGTTTCATGTCCTTCAAGAGTTTGATGAGGGGAAAAGGAGTTGTCGGAGACGTTTAGCTGGCCATAATAAACGGAGGAGGAAGACACATCCAGATGCTGCCGGTAATGGAAATTCCTTGAATGATGATCAGGCTAGTGGTTATCTCTTGATAAGTTTACTGAGGATACTTTCCAACATGCATTCCAATGATAAATCAGATCAGACTAAGGATCAGGATCTGCTGTCCCATCTTTTAAGAAGCCTTGCCAGCTATGGTGGTACAAATGGGAGTAGAAACATATCAGGGCTCCTTCAGGAATCTCAACTGCTGAATGATGGGATTTCTGTTGGAAATACAGAAGTGGTTTCGGCTCTGCTCCCAAATGGTTCTCAAGCTCCCCCACGGCCTATTAAACATCTCAAGGTACCTGAATCTGAAATTCTGCCTAAAGGGGTACATGCAGATGAAGCTAGGGTTGGAAATATGCAAATGACTTCTTGTGGAAAGCCTGGGATTATGTTCCCTATTAAAGACAGTCTGCCAGTTTACTCAGAAGTGAGAGACAGTACTGCAGGGCAGATCAAGTTGAATAATTTTGATTTGAATGACATATATATTGATTCAGATGATGGCATGGAAGATCTGGAGAGATCGCCTGTCCCTGAGAATCTGGGGACTGGTTCTCTTGAATGTCCCTCATGGGTACAACAAGACTCTCATCAATCAAGTCCACCTCAGACAAGTGGCAATTCTGATTCAGCATCTGCCCAGTCACCTTCTAGTTCCAGTGGAGAGGCTCAGAGCCGCACCGATCGGATTGTTTTCAAACTATTTGGGAAAGAACCAAATGATTTTCCTCTTGTTCTGCGAGCACAGATTCTTGACTGGTTATCTCATAGTCCTACTGACATTGAGAGCTACATTAGGCCTGGTTGTATTGTTCTAACAATTTATCTTCGTCTACCTGAGTCCACATGGGAGGAGCTTTGCTGTGATCTGGGTTCCAGTTTGAGTAGGCTTCTGGATGTCTCAAATGATACTTTCTGGAGAACTGGATGGGTGTATATTAGAGTGCAGCATCAAATAGCATTTATCTACAACGGTCAGGTTGTTGTAGACATGTCCTTACCTCTCAAGACTAATAATTATAGCAAAATTTTAAGCATCAAACCTATTGCAATATCTATGTCTGAGGAAGCTCAATTTTTGGTTAAAGGCTTTAACCTGTCTCGGCCAGCCACAAGGTTACTCTGTGCACTAGAAGGAAAGTATCTTGTTAAGGAAGCAACTCATGAGTTAATGGATGATATTGATAGTGTGAAGGAGCATGATGAGCTCCAGTATCTCAACTTCTCTTGCTCTATTCCCAAAATGACTGGAAGAGGATTCATTGAGGTTGAAGATCACGGTCTCAGCAGCAGCTTCTTTCCCATTATAGTTGCAGAGAAGGATGTTTGTTCAGAGATCTGTATGCTTGAGAGTACGATAGAGATGACTGACATTGATGAAGATGGCTGTGGGACTGGAAAATTGGAAACCAAGAATCAAGCTATGGACTTTATACATGAAATTGGTTGGCTTCTTCATAGAAGTCAATTAAAGTCCAGATTGGGTCACTTGGATCCTAACGCAGACCTTTTTTCTTTCAAACGGTTCAAGTGGCTGATGGAGTTCTCCATGGACCGTGATTGGTGTGCTGTTGTCAAGAAACTCTTAGACATCATGCTTGATGGTACTGTGGGTGCAGGAGAGTACCCTTCCTTGAAGCTTGCATTCATGGAGATGGGTCTTCTTCACAGAGCTGTACGAAGAAATTCTAGGCCTCTGGTGGAACTCCTGTTGAGATACGTCCCTGAGAGAGTTTCTGATGTACTAGCATCTGATGATAAGTCAATGGTTGAGGGAGGCCGTGCAAGCTTCTTGCTTAGGCCTGATGTGGTAGGACCTGCTGGTTTGACACCTCTCCACATTGCAGCTGGTAGGGATGGTTCCGAAGATGTATTGGATGCATTGACTGATGATCCTGGAATGGTGGGAGTTGAAGCATGGAAGAGTGCTCGTGACAGCACAGGTTTCACTCCTGAAGATTATGCTCGTTTACGAGGGCACTACTCATACATCCACCTGGTCCAGAAGAAGATCAACAGAAGACTAGGAAATGGGCATGTGGTAGTTGACGTGCCTAGCCATCTCTCAGATTACAGTGTGAACCAGAAGCAAAACGATGAGGCAACTACCGGCTTCCAGATTGAAAGGACCACATTGAGACCCATTCAACAGCAGCAGTGCAAGCGTTGCAATCACAAGGTGGCTTATGGAAATGCCAGCAGATCTCTGTTATACAGGCCTGCAATGCTTTCAATGGTGGCCATAGCTGCAGTCTGTGTCTGTGTAGCACTTCTCTTTAAAAGCTCACCTGAAGTTCTATACGTGTTTACTCCCTTCCGGTGGGAATTGTTGGACTATGGCACAAGCTGA 3051 0.45 MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFFPHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDNDETGTLSLKLGGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSLNDDQASGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQESQLLNDGISVGNTEVVSALLPNGSQAPPRPIKHLKVPESEILPKGVHADEARVGNMQMTSCGKPGIMFPIKDSLPVYSEVRDSTAGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQVVVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLCALEGKYLVKEATHELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPIIVAEKDVCSEICMLESTIEMTDIDEDGCGTGKLETKNQAMDFIHEIGWLLHRSQLKSRLGHLDPNADLFSFKRFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLLHRAVRRNSRPLVELLLRYVPERVSDVLASDDKSMVEGGRASFLLRPDVVGPAGLTPLHIAAGRDGSEDVLDALTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRLGNGHVVVDVPSHLSDYSVNQKQNDEATTGFQIERTTLRPIQQQQCKRCNHKVAYGNASRSLLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0531 1016 MobiDBLite consensus disorder prediction 420 459 - -
Vvi7g0531 1016 FunFam Squamosa promoter-binding-like protein 14 143 213 - -
Vvi7g0531 1016 Gene3D - 729 906 IPR036770 -
Vvi7g0531 1016 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Vvi7g0531 1016 SUPERFAMILY Ankyrin repeat 783 901 IPR036770 -
Vvi7g0531 1016 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 900 IPR044817 GO:0003677
Vvi7g0531 1016 SUPERFAMILY SBT domain 150 231 IPR036893 GO:0003677|GO:0005634
Vvi7g0531 1016 MobiDBLite consensus disorder prediction 112 137 - -
Vvi7g0531 1016 MobiDBLite consensus disorder prediction 401 459 - -
Vvi7g0531 1016 MobiDBLite consensus disorder prediction 216 237 - -
Vvi7g0531 1016 Pfam SBP domain 152 225 IPR004333 GO:0003677
Vvi7g0531 1016 Gene3D - 143 213 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0531 Vvi-Chr7 4628690 4637002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0531 1 1016 SBP-box Gene Family AT3G60030 56.425 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi7g0531 SBP 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0531 - - vvi:100258912 2013.04