LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0531	ATGGAGGCTAAAATTGGGGGTGAAGCTCACCATTTCTATGGTATCGGGACTTCTGATTTGCGTGTGGTGGGGAAGAGGAGTTCGGAATGGGATTCGAATGAGTGGAAATGGGATGGTGATCTTTTCATAGCCAGTCCCATGAATCCAGTGCCCTCAGATTACACGAGCCAGCAATTTTTCCCACATGGCTCGGCAATTCCAGTGACTGGGGGTTCCTCTAACAGTTCTTCTTCGTGTTCTGATGAAGTGAATCTTGGAATTGAGAAAAGGAAAAGGGAATTGGAGAAACGTAGGAGGGTTATCGTTGTCCAAGACGACAATGATGAAACTGGGACTCTTTCTCTAAAGCTTGGTGGGCATGGACATTCGGTTTCTGAAAGGGAGGTGGGAAATTGGGAAGGGACAAGTGGGAAGAAGACCAAATTGGCTGGAGTTAGTTCCAGTCGCGCTGTTTGTCAGGTAGAGGACTGTGGGGCTGATCTAAGCAAAGCCAAGGATTATCACAGACGACATAAGGTCTGTGAGATGCATTCAAAGGCCGGTTGCGCCCTGGTGGGAAATGATATGCAACGATTCTGTCAGCAGTGTAGTAGGTTTCATGTCCTTCAAGAGTTTGATGAGGGGAAAAGGAGTTGTCGGAGACGTTTAGCTGGCCATAATAAACGGAGGAGGAAGACACATCCAGATGCTGCCGGTAATGGAAATTCCTTGAATGATGATCAGGCTAGTGGTTATCTCTTGATAAGTTTACTGAGGATACTTTCCAACATGCATTCCAATGATAAATCAGATCAGACTAAGGATCAGGATCTGCTGTCCCATCTTTTAAGAAGCCTTGCCAGCTATGGTGGTACAAATGGGAGTAGAAACATATCAGGGCTCCTTCAGGAATCTCAACTGCTGAATGATGGGATTTCTGTTGGAAATACAGAAGTGGTTTCGGCTCTGCTCCCAAATGGTTCTCAAGCTCCCCCACGGCCTATTAAACATCTCAAGGTACCTGAATCTGAAATTCTGCCTAAAGGGGTACATGCAGATGAAGCTAGGGTTGGAAATATGCAAATGACTTCTTGTGGAAAGCCTGGGATTATGTTCCCTATTAAAGACAGTCTGCCAGTTTACTCAGAAGTGAGAGACAGTACTGCAGGGCAGATCAAGTTGAATAATTTTGATTTGAATGACATATATATTGATTCAGATGATGGCATGGAAGATCTGGAGAGATCGCCTGTCCCTGAGAATCTGGGGACTGGTTCTCTTGAATGTCCCTCATGGGTACAACAAGACTCTCATCAATCAAGTCCACCTCAGACAAGTGGCAATTCTGATTCAGCATCTGCCCAGTCACCTTCTAGTTCCAGTGGAGAGGCTCAGAGCCGCACCGATCGGATTGTTTTCAAACTATTTGGGAAAGAACCAAATGATTTTCCTCTTGTTCTGCGAGCACAGATTCTTGACTGGTTATCTCATAGTCCTACTGACATTGAGAGCTACATTAGGCCTGGTTGTATTGTTCTAACAATTTATCTTCGTCTACCTGAGTCCACATGGGAGGAGCTTTGCTGTGATCTGGGTTCCAGTTTGAGTAGGCTTCTGGATGTCTCAAATGATACTTTCTGGAGAACTGGATGGGTGTATATTAGAGTGCAGCATCAAATAGCATTTATCTACAACGGTCAGGTTGTTGTAGACATGTCCTTACCTCTCAAGACTAATAATTATAGCAAAATTTTAAGCATCAAACCTATTGCAATATCTATGTCTGAGGAAGCTCAATTTTTGGTTAAAGGCTTTAACCTGTCTCGGCCAGCCACAAGGTTACTCTGTGCACTAGAAGGAAAGTATCTTGTTAAGGAAGCAACTCATGAGTTAATGGATGATATTGATAGTGTGAAGGAGCATGATGAGCTCCAGTATCTCAACTTCTCTTGCTCTATTCCCAAAATGACTGGAAGAGGATTCATTGAGGTTGAAGATCACGGTCTCAGCAGCAGCTTCTTTCCCATTATAGTTGCAGAGAAGGATGTTTGTTCAGAGATCTGTATGCTTGAGAGTACGATAGAGATGACTGACATTGATGAAGATGGCTGTGGGACTGGAAAATTGGAAACCAAGAATCAAGCTATGGACTTTATACATGAAATTGGTTGGCTTCTTCATAGAAGTCAATTAAAGTCCAGATTGGGTCACTTGGATCCTAACGCAGACCTTTTTTCTTTCAAACGGTTCAAGTGGCTGATGGAGTTCTCCATGGACCGTGATTGGTGTGCTGTTGTCAAGAAACTCTTAGACATCATGCTTGATGGTACTGTGGGTGCAGGAGAGTACCCTTCCTTGAAGCTTGCATTCATGGAGATGGGTCTTCTTCACAGAGCTGTACGAAGAAATTCTAGGCCTCTGGTGGAACTCCTGTTGAGATACGTCCCTGAGAGAGTTTCTGATGTACTAGCATCTGATGATAAGTCAATGGTTGAGGGAGGCCGTGCAAGCTTCTTGCTTAGGCCTGATGTGGTAGGACCTGCTGGTTTGACACCTCTCCACATTGCAGCTGGTAGGGATGGTTCCGAAGATGTATTGGATGCATTGACTGATGATCCTGGAATGGTGGGAGTTGAAGCATGGAAGAGTGCTCGTGACAGCACAGGTTTCACTCCTGAAGATTATGCTCGTTTACGAGGGCACTACTCATACATCCACCTGGTCCAGAAGAAGATCAACAGAAGACTAGGAAATGGGCATGTGGTAGTTGACGTGCCTAGCCATCTCTCAGATTACAGTGTGAACCAGAAGCAAAACGATGAGGCAACTACCGGCTTCCAGATTGAAAGGACCACATTGAGACCCATTCAACAGCAGCAGTGCAAGCGTTGCAATCACAAGGTGGCTTATGGAAATGCCAGCAGATCTCTGTTATACAGGCCTGCAATGCTTTCAATGGTGGCCATAGCTGCAGTCTGTGTCTGTGTAGCACTTCTCTTTAAAAGCTCACCTGAAGTTCTATACGTGTTTACTCCCTTCCGGTGGGAATTGTTGGACTATGGCACAAGCTGA	3051	0.45	MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFFPHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDNDETGTLSLKLGGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSLNDDQASGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQESQLLNDGISVGNTEVVSALLPNGSQAPPRPIKHLKVPESEILPKGVHADEARVGNMQMTSCGKPGIMFPIKDSLPVYSEVRDSTAGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQVVVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLCALEGKYLVKEATHELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPIIVAEKDVCSEICMLESTIEMTDIDEDGCGTGKLETKNQAMDFIHEIGWLLHRSQLKSRLGHLDPNADLFSFKRFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLLHRAVRRNSRPLVELLLRYVPERVSDVLASDDKSMVEGGRASFLLRPDVVGPAGLTPLHIAAGRDGSEDVLDALTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRLGNGHVVVDVPSHLSDYSVNQKQNDEATTGFQIERTTLRPIQQQQCKRCNHKVAYGNASRSLLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS*	1017

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0531	1016	MobiDBLite	consensus disorder prediction	420	459	-	-
	Vvi7g0531	1016	FunFam	Squamosa promoter-binding-like protein 14	143	213	-	-
	Vvi7g0531	1016	Gene3D	-	729	906	IPR036770	-
	Vvi7g0531	1016	ProSiteProfiles	Zinc finger SBP-type profile.	149	226	IPR004333	GO:0003677
	Vvi7g0531	1016	SUPERFAMILY	Ankyrin repeat	783	901	IPR036770	-
	Vvi7g0531	1016	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	72	900	IPR044817	GO:0003677
	Vvi7g0531	1016	SUPERFAMILY	SBT domain	150	231	IPR036893	GO:0003677\|GO:0005634
	Vvi7g0531	1016	MobiDBLite	consensus disorder prediction	112	137	-	-
	Vvi7g0531	1016	MobiDBLite	consensus disorder prediction	401	459	-	-
	Vvi7g0531	1016	MobiDBLite	consensus disorder prediction	216	237	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0531	Vvi-Chr7	4628690	4637002	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0531	1	1016	SBP-box Gene Family	AT3G60030	56.425	0.0	1024

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Vvi7g0531		SBP	1.4e-28	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0531	-		-	vvi:100258912	2013.04

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