Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0520 ATGACGGTCCATAGTCATTGGGCCTCGGGCCAGTCGCAACTACATCCAAACCCTAGAAACCCTAATCCTTACCCCTCTTCCCCTGACGCGAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTTGAGGTGGAGTCCTCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAGCAACGCCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTAGCTGACTACAACATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGAGGTGGCGCCAAGAAGAGGAAGAAGAAGACCTACACAAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCCGTGTTGCAGTTCTACAAGGTTGATGACTCCGGCAAGGTCCAGAGGCTGAGGAAGGAGTGCCCCAACGCTGAGTGTGGCGCCGGCACTTTCATGGCCAACCACTTTGACCGTCACTATTGCGGTAAGTGTGGTTTGACTTATGTTTACCAGAAGGCCGGTGGTGAGTGA 564 0.5443 MTVHSHWASGQSQLHPNPRNPNPYPSSPDAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGE* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0520 187 SUPERFAMILY Ubiquitin-like 18 108 IPR029071 -
Vvi7g0520 187 PRINTS Ubiquitin signature 63 83 IPR019956 -
Vvi7g0520 187 PRINTS Ubiquitin signature 84 105 IPR019956 -
Vvi7g0520 187 PRINTS Ubiquitin signature 42 62 IPR019956 -
Vvi7g0520 187 MobiDBLite consensus disorder prediction 1 17 - -
Vvi7g0520 187 MobiDBLite consensus disorder prediction 1 29 - -
Vvi7g0520 187 CDD Ubl_ubiquitin 32 107 - -
Vvi7g0520 187 SMART Ribosomal_S27_2 133 178 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vvi7g0520 187 FunFam Ubiquitin-40S ribosomal protein S27a 32 110 - -
Vvi7g0520 187 ProSiteProfiles Ubiquitin domain profile. 32 107 IPR000626 GO:0005515
Vvi7g0520 187 Gene3D - 110 185 IPR038582 -
Vvi7g0520 187 Pfam Ribosomal protein S27a 133 178 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vvi7g0520 187 SMART ubq_7 32 103 IPR000626 GO:0005515
Vvi7g0520 187 PANTHER UBIQUITIN 32 120 - -
Vvi7g0520 187 SUPERFAMILY Zn-binding ribosomal proteins 131 184 IPR011332 GO:0006412
Vvi7g0520 187 Pfam Ubiquitin family 34 105 IPR000626 GO:0005515
Vvi7g0520 187 Gene3D - 26 109 - -
Vvi7g0520 187 ProSitePatterns Ubiquitin domain signature. 58 83 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0520 Vvi-Chr7 4556805 4557477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0520 32 187 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.513 1.60e-91 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0520 K02977 - sspl:121801802 280.796