Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0515 ATGGAAGATGAGCATATAAGGATAGATGATCTATCTATGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGGTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAATGTGGACAGATTTTTCTTTGAAGATGCTAACTTTCCTCGCACATCTGAAGTTAATGATGTTTTCTCGGAGAGGGTTGAAAATTCTGTCCGGAAGGCATTTCTTCTGGCTGATCTAGCTTTGGCAGATGATAGTGGTGTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAAAGGTCAGGCAGTAGACATGTCTCAAGACCATAGACCTAGTTACCCATTAGAACGGAAGCGTGTTGAAGAATTGGGAGGTTTTGTTGATGGTGAGTATCTCAATGGGGTTTTATCAGTAACCCGAGCACTGGGGGACTGGGATATGAAGTTCCCCCGGGGCTCTGCATCACCGCTCATTGCAGAGCCAGAATTCAGGCAGGTGGCATTAACAGAGGAGGACGAATTCCTCATCATTGGGTGTGATGGTATTTGGGATGTGATGTCTAGTCAGGAGGCAGTTAGCCTTGTGCGTCGTGGCCTACGGCGGCATGATGACCCAGAGCAGTCTGCAAGGGACCTTGTCATGGAGGCTCTGCGCCTCAACACATTTGACAATCTCACTGTTATTGTCATTTGTTTTTCTTCTCCTGATCAGTTTGAACCAACACCTCCACGACAACGCAGATTCAGGTGCTGCAACATCTCCATGGAGGCCCTTTGCAGTTTGAGGAGCTTATTGGACAACAATGGCAACCGATGA 894 0.4765 MEDEHIRIDDLSMHLGSVSRLPNPCAFYGVFDGHGGPEAAAYVRKNVDRFFFEDANFPRTSEVNDVFSERVENSVRKAFLLADLALADDSGVSSSSGTTALTALIFGRTLMVANAGDCRAVLCRKGQAVDMSQDHRPSYPLERKRVEELGGFVDGEYLNGVLSVTRALGDWDMKFPRGSASPLIAEPEFRQVALTEEDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPEQSARDLVMEALRLNTFDNLTVIVICFSSPDQFEPTPPRQRRFRCCNISMEALCSLRSLLDNNGNR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0515 297 ProSitePatterns PPM-type phosphatase domain signature. 27 35 IPR000222 GO:0043169
Vvi7g0515 297 Gene3D - 1 264 IPR036457 -
Vvi7g0515 297 SMART PP2C_4 4 256 IPR001932 -
Vvi7g0515 297 FunFam Probable protein phosphatase 2C 22 1 261 - -
Vvi7g0515 297 SUPERFAMILY PP2C-like 1 260 IPR036457 -
Vvi7g0515 297 SMART PP2C_SIG_2 3 258 IPR001932 -
Vvi7g0515 297 Pfam Protein phosphatase 2C 1 250 IPR001932 -
Vvi7g0515 297 CDD PP2Cc 1 258 IPR001932 -
Vvi7g0515 297 PANTHER PROTEIN PHOSPHATASE 2C 1 256 IPR015655 GO:0004722|GO:0006470
Vvi7g0515 297 ProSiteProfiles PPM-type phosphatase domain profile. 1 258 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0515 Vvi-Chr7 4524173 4525351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0515 1 292 PP2C-type Phosphatase Gene Family AT3G62260 68.367 1.55e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0515 K14803 - vvi:100246961 570.081