Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0497 ATGGTGGTGAGCGAGAGAGGTTGTGACTCAGAAGAAGAGATGAACATGGACCTGAGGAAAGGTCCATGGACGGCTGAAGAGGACACGCTGCTCAACAATTACATTACCATCCACGGCGAAGGCCGCTGGAACTCCCTAGCTCGCTGCGCAGGTTTGAAGAGAACTGGGAAGAGTTGCAGGCTGAGATGGTTGAACTACTTGCGACCTAATGTCAAGCGCGGAAACATTACGCTGCAAGAACAGCTGCTTATCCTCGAGCTCCATTCACGCTATGGAAACAGGTGGTCCAAAATAGCCCAACACCTGCCTGGGAGGACAGACAATGAGATCAAAAACTACTGGAGAACAAGGGTTCAAAAGCAGGCAAAGCAGCTCAAATGCGATGTTAACAGCAAGCAATTCAGAGACACCATGCGCTATGTGTGGATGCCACGCTTGGTCGAGCGAATCAAAGCTGCCGGAGGCGATTCCACCCCCACCGCCCCCGCCACCTACGGTCACCATATGTCAAGTCAAATTCTGGACATGCCCAGAAACGGCGAGTTTGGGTTGGGGTACTCAGACCCAGGTCTCCGGCCAGAGTTCTCCGGGGGGCCCTCAGAGGGGTCGGAGACCCAGGTGTCGCCGGTATCAGACATGACAGACTACTACGATTTCTCTGGCGGGCACTGCTCGGACAGTCAGCAAAACGGGGTCATTTCATACCCAGAACAAGCGGATACATCATCTGGGTGCTTGGAATTTGAGGGGCTTGAGCAGAGCAATGGGTGGTCGTTGGGAGGTGGGGACTCACTGGAGAATTTGCTGAATGATGAGGATATTTGGTTCTTAAAGCAACAGTTCTTTGACGACTTCTAG 858 0.5291 MVVSERGCDSEEEMNMDLRKGPWTAEEDTLLNNYITIHGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPNVKRGNITLQEQLLILELHSRYGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAKQLKCDVNSKQFRDTMRYVWMPRLVERIKAAGGDSTPTAPATYGHHMSSQILDMPRNGEFGLGYSDPGLRPEFSGGPSEGSETQVSPVSDMTDYYDFSGGHCSDSQQNGVISYPEQADTSSGCLEFEGLEQSNGWSLGGGDSLENLLNDEDIWFLKQQFFDDF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0497 285 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vvi7g0497 285 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vvi7g0497 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vvi7g0497 285 FunFam MYB transcription factor 77 140 - -
Vvi7g0497 285 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Vvi7g0497 285 FunFam Myb transcription factor 20 72 - -
Vvi7g0497 285 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 164 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi7g0497 285 SMART sant 72 120 IPR001005 -
Vvi7g0497 285 SMART sant 19 69 IPR001005 -
Vvi7g0497 285 Gene3D - 76 140 - -
Vvi7g0497 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vvi7g0497 285 CDD SANT 22 67 IPR001005 -
Vvi7g0497 285 Gene3D - 21 72 - -
Vvi7g0497 285 CDD SANT 88 116 IPR001005 -
Vvi7g0497 285 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vvi7g0497 285 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vvi7g0497 285 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0497 Vvi-Chr7 4391137 4392178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0497 13 284 MYB Transcription Factor Family AT2G47190 49.818 4.80e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g0497 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0497 K09422 - vvi:100260647 539.265