Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0493 ATGGACGCGAAGGACATTCTCGGCTTGCCCAAAACTCCACTTACTGCACCTCAAGAGAAGAAATCAAGACCTCAGAAGGATTCTCAGAGAAAACCGGATGGCATTTCGCGAGAGGTTTATGCGCTTACAGGGGGTTTGGCGCCCCTAATGCCTGCAGTGGACGTCTCTCAGCTGAAACGGCGGCCTCAATCGGACGAAAAGGTTACTTGGCAGTGGCTTCCTTTTACAAGTTCTGCTCGGACTGATAATTTGCAGCTTTATCACTGGGTCAGAGTTGTAAATGGTGTTCCGCCAACTGGTGACTACTCTTTTGCTAAGTATAACAAGTCTGTCAATGTTGTCAAATACACAGATGAGGAGTATGAGAAGTATTTGACTGATCCTACGTGGACCAGGGAAGAGACAGATCAGTTATTTGAGTTGTGCGAACGATTTGATCTCCGCTTCATTGTAATAGCTGACAGGTTTCCATCATCTCGAACTGTGGAGGATTTGAAGAATCGCTATTATAGTGTATCCCGAGCTATTTTGGTTGCTAGAGCTCCATCTTCAGGCGATGTTTCTGGGCACCCCCTTGTAAAGGAACCATATAATGTTTCACAAGAGGTTGAACGCAAGCGTGCATTATCCATGATCCTTTCCCAGACAAAGCAGCAAGAGCGAAAAGATGCTGAGGTTCTTGCTGAAGCCAAAAGAATTACTGAAGCACGCATTGCTGCAAGGGGTGCTGAAGAGTCTGATATGCCTGTCGCATCAAATGTCAGCCCTGAAAGTAACGAAAAGAATATTATTCCTGTTGAGACTGTGTCACCTTCTTCCAATGTTCAGATTCCCCCTACAACTGTTGCACCTCCAACATCTACAGCTGATGATATATCCACTCTAAATTCACTACGTGGGATGCGGGTATACTTGAGAACGTATGCACTTGAGCAAATGGTGCAAGCTGCAAGCTCATCTGCTGGACTTAGGACTATCAAGCGGGTTGAGCAAACTCTACAGGATCTTGGGGTTAATTTAAAACCGAAGGTACCAACAAAATCTGTTTGTGCAGAGCATCTGGAATTGAGAAAAGAAATATTGACTCTACTAAACCTTCAGAAACAGTTGCAATACAAGGAAGCAGAAGGTTCTTCGCATCGTGATGGTTCATATGTTGAAACACCAGGCACACCTAAGCGATCCCACCGCACTGGGGAACAGGATCGGACATTTATTCCTGACTCCATAAGTTTTGGAGGTGAAAGAGTTGGCAAAAGGGACCAGAAACGCAAGGTAAGTATCAGTTTTTTTCTGTTTTGTTTACCTTCAATCATTTTTATACGTCTTCCTTGTTTCCCCCTCTTGTCTGAAATGTAA 1359 0.4452 MDAKDILGLPKTPLTAPQEKKSRPQKDSQRKPDGISREVYALTGGLAPLMPAVDVSQLKRRPQSDEKVTWQWLPFTSSARTDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVNVVKYTDEEYEKYLTDPTWTREETDQLFELCERFDLRFIVIADRFPSSRTVEDLKNRYYSVSRAILVARAPSSGDVSGHPLVKEPYNVSQEVERKRALSMILSQTKQQERKDAEVLAEAKRITEARIAARGAEESDMPVASNVSPESNEKNIIPVETVSPSSNVQIPPTTVAPPTSTADDISTLNSLRGMRVYLRTYALEQMVQAASSSAGLRTIKRVEQTLQDLGVNLKPKVPTKSVCAEHLELRKEILTLLNLQKQLQYKEAEGSSHRDGSYVETPGTPKRSHRTGEQDRTFIPDSISFGGERVGKRDQKRKVSISFFLFCLPSIIFIRLPCFPLLSEM* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0493 452 Gene3D - 99 185 - -
Vvi7g0493 452 MobiDBLite consensus disorder prediction 1 37 - -
Vvi7g0493 452 SUPERFAMILY Homeodomain-like 128 176 IPR009057 -
Vvi7g0493 452 SMART sant 126 175 IPR001005 -
Vvi7g0493 452 MobiDBLite consensus disorder prediction 270 289 - -
Vvi7g0493 452 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 428 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Vvi7g0493 452 MobiDBLite consensus disorder prediction 20 34 - -
Vvi7g0493 452 FunFam DNA methyltransferase 1-associated protein 1 98 185 - -
Vvi7g0493 452 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 318 381 IPR008468 GO:0005634|GO:0045892
Vvi7g0493 452 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Vvi7g0493 452 CDD SANT_DMAP1_like 130 172 - -
Vvi7g0493 452 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0493 Vvi-Chr7 4353945 4361526 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi7g0493 DMAP1 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0493 K11324 - vvi:100265771 833.558