Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0480 ATGGTCACGGAGGCGGAGGGGTTGAAGAAGGGAGAGAAGGTGGAGGTGAGCAGCGAAGAAGAAGGACTGCGAGGATCGTGGTACACGGCGACCGTGCTTCGGCCGGTTACGAAGAAGACCAAGAAAATCTACGTGGAGTATCATACGCTGATGTCGGAGGAGGACGACTCTAAGCCGCTGAGAGAGTCGGTGGACGCGATTCTAGTGCGGCCGTACCCGCCGCGGGAGGTGGGCCGGCGCTTCAAGCTCATGGAGGAAGTGGACGCCTTCTACAGCGACGGGTGGTGGGAGGGAGTGGTGACGCAGGACTTCGAGGGAGCAGATCGACTTTCACCAGGTGGATCTGCGGCTGCATCGAGAGTGGGTGAGGGGAAATTGGGTGCCACCGCTGGAGGAATCTCAGTCGTGAAGATTTCATGCAGCAGACTATGTTCTCAGTGGAAGCTCTTCTCATCCTTCTTTGTTGCCATGGATAAAGCTGCCATTTTTGCTGCGGATAGTTTTTCATGGGGGACTTCTGCCGCAACATTACATGTTTCTTTAACAGCTCTAACTTGA 558 0.5538 MVTEAEGLKKGEKVEVSSEEEGLRGSWYTATVLRPVTKKTKKIYVEYHTLMSEEDDSKPLRESVDAILVRPYPPREVGRRFKLMEEVDAFYSDGWWEGVVTQDFEGADRLSPGGSAAASRVGEGKLGATAGGISVVKISCSRLCSQWKLFSSFFVAMDKAAIFAADSFSWGTSAATLHVSLTALT* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0480 185 CDD Tudor_Agenet_AtDUF_rpt1_3 22 74 - -
Vvi7g0480 185 Pfam Agenet domain 11 74 IPR008395 -
Vvi7g0480 185 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 103 - -
Vvi7g0480 185 SMART agenet_At_2 79 149 IPR014002 -
Vvi7g0480 185 SMART agenet_At_2 6 77 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0480 Vvi-Chr7 4278293 4281978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0480 18 109 PHD Transcription Factor Family AT5G58610 32.143 4.44e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0480 - - vvi:100243428 201.445