Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0472 ATGACCTTTTTAGATTACAATGAGGGTGTCGCCTTTGTGAAACTTTATGTTGGATGCGTTCCAAGAACTGTAACAGAAGAAGATATTCGCTCCTTGTTTGAAGAACATGGAAAGATTGTCGAGGTTGTTTTACTCAAGGATAAGAGAACTGGCCAACAACAAGAATGCTGTTTTGTAAAATATGCAACCATGGACGAAGCTGACAGAGCTATTAAAGCTTTAAATAACCAACGAACTTTGCCTGGGGGAGTGGCAGCCATCAAAGTTAGATATGCTGATGGGGAACGGGAGCGCCTTGCTAATTGCCCTACACTTGCAAAAGGGCTAGCAGGGCCAGCAGGGCCAGCAGGACCAGCAGGACCAGCAGGACCAGCAGGACCGGCAGGACCGGCAGGACCAGCAGGACCGGCAGGACCAGCAGGACCGGCAGGACCAGCAGGACCGGCAGGACCGGCCGGGCCGGCAAGGCCAGCAGGGCCATTTGAGGACAAACTCTATGTTGGTTATCTGAACAAGCAAGCTTCAAAAAGGGAAATTGAGGAAATATTTTCCCCTTATGGCATCGTTGAAGATATCTTCATTGTACGGGACGACATGAAGCAGAGTCGTGGTTGTGGATTTGTTAAGCTTTCTAATAGAGATATGGCAGTGGCAGCAATCAATGCTCTAAATGGAAATTACGTGATGAGGGGTTGTGATCAGCCACTAATTGTCCGTTTTGCGGATCCTAAGAAGCCTAGGATTGGAGAATCAAGAGGCCATGTTGCATTTGGTGGCCCAAAGTTTGGTCCCCGCTCTCAAGAACCACTCGGTTGGCCTGCACCTAATGTTGGTGATCCCATGTGGAGGCAATTCTTGCCTAATCCTCTGTATCCAGCCAGTCCAAACAGCACAGCATCATCATGCCAAGTTATGCAAAGCAACTCCAGTGCTTCAGTACAACCAATACCAGCTCATTCACAACCACAAGTTGTTTCCCAAACAGCAAACCAGCAGCCTAATGTTCCTAGCGCTGTGCAGCAACCGCTTCATACGTGGCAGCAGTCACCTTCACAGGAGTTACAACAGGCACATACTCTACAGAAAGGCTCTCAGTCATTGAAAGAAGCAGTCTCTGAGATACAGAAACAGTTGCATCTGGCTCCACCTCCAACCCAAAACTTGGAGCAGCAGCAGAATTCCCATGTTACTACACAGCAGACTGGAAGCAATCCTCAGACAGTTGCAAGCACCGGTACCCTACCACCAGCAGTTTTGCCTTCAATTGTATCTTCTTCTCCTGCAGTTTGTGCAAGTTCTGAAACAGCAGATCTTCTAGAATGTGATTGGAGTGAACATATCTGCCCAGATGGATTCAAGTATTATTACAATTGTGAAACTTGCGAAAGCAGGTGGGAGAAGCCTGAGGAGTATATCTTATTTCTACAACAGTTACCAAAGCACCAACAACTCCAAAATCCTTCTGGTCAACAGTGTCAATCTCCATGCCACTCACAGGTTCTCTCTACCCAACAAAATTTTCAAACACGGATTGTGCCGCTTCAAACAGAGCTCTCCCATCAGAAATTGCATTCACCTTCCTCATCTTCGCCAGCTGGGTCTTTGTCATGTGCTAGTATAGCTAGCAACAAATCTAGCCACTGCCCAACTGTGTGTCCAACAGGGTTTGGACCATGA 1677 0.4753 MTFLDYNEGVAFVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQECCFVKYATMDEADRAIKALNNQRTLPGGVAAIKVRYADGERERLANCPTLAKGLAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPAGPARPAGPFEDKLYVGYLNKQASKREIEEIFSPYGIVEDIFIVRDDMKQSRGCGFVKLSNRDMAVAAINALNGNYVMRGCDQPLIVRFADPKKPRIGESRGHVAFGGPKFGPRSQEPLGWPAPNVGDPMWRQFLPNPLYPASPNSTASSCQVMQSNSSASVQPIPAHSQPQVVSQTANQQPNVPSAVQQPLHTWQQSPSQELQQAHTLQKGSQSLKEAVSEIQKQLHLAPPPTQNLEQQQNSHVTTQQTGSNPQTVASTGTLPPAVLPSIVSSSPAVCASSETADLLECDWSEHICPDGFKYYYNCETCESRWEKPEEYILFLQQLPKHQQLQNPSGQQCQSPCHSQVLSTQQNFQTRIVPLQTELSHQKLHSPSSSSPAGSLSCASIASNKSSHCPTVCPTGFGP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0472 558 Gene3D - 439 485 - -
Vvi7g0472 558 MobiDBLite consensus disorder prediction 117 155 - -
Vvi7g0472 558 SUPERFAMILY RNA-binding domain, RBD 164 266 IPR035979 GO:0003676
Vvi7g0472 558 MobiDBLite consensus disorder prediction 296 372 - -
Vvi7g0472 558 CDD WW 441 470 IPR001202 GO:0005515
Vvi7g0472 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Vvi7g0472 558 SMART ww_5 438 470 IPR001202 GO:0005515
Vvi7g0472 558 ProSitePatterns WW/rsp5/WWP domain signature. 443 468 IPR001202 GO:0005515
Vvi7g0472 558 ProSiteProfiles WW/rsp5/WWP domain profile. 437 470 IPR001202 GO:0005515
Vvi7g0472 558 SUPERFAMILY WW domain 442 476 IPR036020 GO:0005515
Vvi7g0472 558 FunFam Flowering time control protein FCA 159 249 - -
Vvi7g0472 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 243 IPR000504 GO:0003723
Vvi7g0472 558 MobiDBLite consensus disorder prediction 296 413 - -
Vvi7g0472 558 Pfam Collagen triple helix repeat (20 copies) 107 159 IPR008160 -
Vvi7g0472 558 FunFam flowering time control protein FCA isoform X2 7 99 - -
Vvi7g0472 558 MobiDBLite consensus disorder prediction 113 157 - -
Vvi7g0472 558 Pfam WW domain 440 468 IPR001202 GO:0005515
Vvi7g0472 558 PANTHER RNA BINDING PROTEIN 13 452 - -
Vvi7g0472 558 Gene3D - 8 101 IPR012677 -
Vvi7g0472 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 80 IPR000504 GO:0003723
Vvi7g0472 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 229 IPR000504 GO:0003723
Vvi7g0472 558 Gene3D - 158 249 IPR012677 -
Vvi7g0472 558 MobiDBLite consensus disorder prediction 379 413 - -
Vvi7g0472 558 SMART rrm1_1 164 239 IPR000504 GO:0003723
Vvi7g0472 558 SMART rrm1_1 14 88 IPR000504 GO:0003723
Vvi7g0472 558 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0472 Vvi-Chr7 4204103 4218028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0472 15 345 Eukaryotic Initiation Factors Gene Family AT1G49760 24.863 1.95e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0472 K13207 - vri:117918207 981.859