Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0470 ATGGAGAGGAGCGGGGTGATGAAAATGGAGGATCCAGTTGGTTCGTGGTCATTTTCAGATCACGCTCCGGATATTCCGGCCGTGTTTGACTTCTCCGACGAAGGCGAGAAGGGAACGCTAGGGTTCATGGAGTTACTGAGTATTCAAAATTATGGGCCGCCGTTGTTTGATTTGGTGCAGCTGCCGTCTTTGGAGAAACCGACGGGTGCAGCTCCGGCAGTGCCGGCGTCTTCTGACGTGGTGAATCCACCGGCCACGCCGAACTCGTCGTCGGTGTCGTCGGCGTCCAGTCATGAGCAAGGCAGCAAAGCAGTTGAAGAAGAGGAGGAGGATGAGGAAGAGAAGAAGACTAAGAAAGAGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCCTTTCCTAGGAGTTACTATCGTTGCACCAGTGCATCATGTAATGTGAAGAAACGAGTGGAGAGGTGTTTCAAGGATCCGGCCATTGTCGTAACCACCTACGAAGGTCAACACACCCACCCAAGCCCAATCATGCCTCGAGCAAACCCATCCTCCATTGCCACCACCTTTGCTGGCCCGAGGCTTCAAACGACGCCGTTTCAACACCTACACCTCCACCACCACCAGCAACAGCAACATCCCTCTTTCAACGATGTTCCACTCTTGAATTATGGCCATGGCAGCAGCTTTGGGAGCGCCGCAAGGTCTGTTCAAGAGAGGCGTTCTTGCGCACCAACTTCTGCTTTGCATAGAGACCATGGCCTTCTTCAAGATATTGTGCCCTCCCATATGAGAAAGGAAGAGGAGATATGA 909 0.5182 MERSGVMKMEDPVGSWSFSDHAPDIPAVFDFSDEGEKGTLGFMELLSIQNYGPPLFDLVQLPSLEKPTGAAPAVPASSDVVNPPATPNSSSVSSASSHEQGSKAVEEEEEDEEEKKTKKELKPKKTTSQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHPSPIMPRANPSSIATTFAGPRLQTTPFQHLHLHHHQQQQHPSFNDVPLLNYGHGSSFGSAARSVQERRSCAPTSALHRDHGLLQDIVPSHMRKEEEI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0470 302 Pfam WRKY DNA -binding domain 149 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0470 302 MobiDBLite consensus disorder prediction 81 100 - -
Vvi7g0470 302 SUPERFAMILY WRKY DNA-binding domain 140 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g0470 302 ProSiteProfiles WRKY domain profile. 143 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0470 302 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 244 IPR044810 GO:0003700
Vvi7g0470 302 Coils Coil 102 122 - -
Vvi7g0470 302 SMART WRKY_cls 148 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0470 302 MobiDBLite consensus disorder prediction 112 138 - -
Vvi7g0470 302 MobiDBLite consensus disorder prediction 67 138 - -
Vvi7g0470 302 Gene3D WRKY domain 133 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g0470 302 FunFam WRKY transcription factor 57 134 208 - -
Vvi7g0470 302 PIRSF WRKY_txn_fact_IIc 1 301 IPR017396 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0470 Vvi-Chr7 4200551 4201858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0470 19 300 WRKY Transcription Factor Family AT2G47260 44.023 1.32e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi7g0470 WRKY 3.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0470 - - vvi:100264006 544.658