Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0460 ATGTCGAAGCGAAAATTCGGATTCGAAGGTTTCGGGATAAATCGGCCAGCGACCTACAACTTCGAGCGGTCCCAAGCTCCGCAGCGCCTCTACGTGCCTCCGTCGTCTCGCTCCGGGGGCCATGACAACTACGAGGATCATGACCTCGACAATATCGACTACGATGACAAGGATGAGCACGGGGAGGTGGCTGGAGGCGGTGGTGAGGTGGATGATGGTGAGATAGACCCACTTGACGCTTTCATGGAGGGAATCCACGAGGAAATGAGAGCTCCGCCGCCGCCGAAGTTGGTGGAGAAGGCGGAGAAGTACGTGGATGATGATGAGGATGATCCGATGGAAAGTTTCTTGAGGGCGAAGAAGGATACGGGGTTGGCGTTGGCTGCGGATGTGATGCATGCCGGGTATGATTCGGACGAGGAGGTTTACGCGGCTGCTAAGGCTGTTGATGCGGGTTTGATAGAGTATGATTCAGATGATAATCCGATTGTTTTGGATAAGAAGAAGATTGAGCCGATTCCGGCTTTGGATCATAGTTCCATTGAGTATGAGCCCTTCAATAAGGACTTCTACGAGGAGAAAGATTCGATTTCAGGAATGACTGAGCAGGATGTCACTGAATACAGGAAGAGCTTGTCGATTCGTGTTTCAGGTTTTGATGTGCCAAGACCAATTAAGACGTTTGAAGACTGTGGTTTCTCTCCGCAATTAATGAATGCTATCACGAAACAAGGGTATGAAAAACCTACACCAATACAGTGCCAAGCTTTTCCAATTGTGCTTTCTGGAAGAGATATTATTGGGATAGCAAAAACTGGGTCTGGAAAAACTGCAGCTTTCGTGCTGCCAATGATTGTCCATATTATGGATCAGCCTGAACTGGCCAAAGAAGAAGGTCCTATTGGAGTGATATGTGCTCCAACTAGGGAATTAGCTCATCAAATATATTTGGAGTCGAAGAAGTTTGCTAAACCATATGGAATTCGTGTATCTGCCATCTATGGTGGGATGTCCAAACTTGAACAGTTCAAAGAACTCAAATCAGGATGTGAGATTGTAATTGCTACTCCTGGGAGATTGATAGACATGATAAAAATGAAGGCCCTGACAATGTTAAGAGCAACTTACCTAGTTCTTGATGAGGCTGATAGGATGTTTGACCTTGGATTTGAGCCACAAATAAGGTCTATCGTTGGTCAGATTCGGCCAGACCGTCAGACTTTACTCTTTTCAGCGACAATGCCCCGCAAAGTTGAAAAGTTAGCAAGAGAGATTCTTACTGATCCTGTAAGAGTTACCGTTGGGGAGGTGGGAATGGCCAATGAAGATATCACACAAGTTGTTCAAGTGATTCCTTCTGATGCTGAGAAGTTGCCCTGGCTTCTTGATAAGCTACCTGGAATGATTGATGATGGAGATGTTCTAGTTTTTGCCTCAAAGAAAGCCACAGTAGATGAAATTGAATCACAATTGGGCCAAAAGGGGCTTAAAATTGCAGCTCTCCATGGTGACAAAGACCAGGCTTCTCGGATGGACATTCTCCAAAAATTTAAATCTGGCATCTATCATGTTCTTATTGCAACTGATGTGGCTGCTCGTGGTCTAGACATCAAGTCAATCAAATCAGTGGTGAACTTTGATATTGCTAGAGACATGGATGCTCATGTTCATCGTATTGGTAGAACTGGTCGTGCTGGTGATAAAGATGGGACTGCATACACCCTGATTACACACAAGGAGGCTCGGTTTGCTGGAGAATTGGTTGGAAGTCTGATTGCAGCCGGACAGAATGTGCCCATGGAACTAATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCCAGAAAAGGAGGTGGGAAAAAGTCAAAAGGAAAGGGAGGCAATGGTCGAGGTGTTCGTGGTGTGGATTTTGGTTTGGGCATCGGATATAACCCTGAGTCCAATAACCCTTCATCTCAAACTGTTCCAAGTCGAGCTGCTGCAGTTAATTCTTTAAGAACGGGAATGATGGCACAATTTAAAAGCAATTTTGTTGCTGCTACATCTGGTTCCCAAAATCAGGGCTCCAATAACAGTCCAAGTACTTATGCCAACAAGAGACCAGTTTTGCAGGGTTTTGTTTCTGGTGGTTCAATAGGTGGAGATATGAATAGAGCTCAAACAACCAGTTCATTCAGCCCTGCTCCAACATCAGCGGGAAAAACCAGTGGTCAGAACTCTGGAGAAAATGCCAGCCACAGAAACTCGGAAAACTCTAGAGATAGATCCAGAGAAAGGCGGAGGCCTTCCGGTTGGGATCGGTGA 2316 0.4585 MSKRKFGFEGFGINRPATYNFERSQAPQRLYVPPSSRSGGHDNYEDHDLDNIDYDDKDEHGEVAGGGGEVDDGEIDPLDAFMEGIHEEMRAPPPPKLVEKAEKYVDDDEDDPMESFLRAKKDTGLALAADVMHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVLDKKKIEPIPALDHSSIEYEPFNKDFYEEKDSISGMTEQDVTEYRKSLSIRVSGFDVPRPIKTFEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPMELMDLAMKDGRFRSKRDARKGGGKKSKGKGGNGRGVRGVDFGLGIGYNPESNNPSSQTVPSRAAAVNSLRTGMMAQFKSNFVAATSGSQNQGSNNSPSTYANKRPVLQGFVSGGSIGGDMNRAQTTSSFSPAPTSAGKTSGQNSGENASHRNSENSRDRSRERRRPSGWDR* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0460 771 CDD SF2_C_DEAD 444 576 - -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 751 771 - -
Vvi7g0460 771 Pfam Helicase conserved C-terminal domain 470 566 IPR001650 -
Vvi7g0460 771 SMART ultradead3 245 447 IPR014001 -
Vvi7g0460 771 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 226 254 IPR014014 GO:0003724
Vvi7g0460 771 MobiDBLite consensus disorder prediction 710 771 - -
Vvi7g0460 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 605 IPR027417 -
Vvi7g0460 771 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Vvi7g0460 771 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 197 606 - -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 648 663 - -
Vvi7g0460 771 Gene3D - 432 610 IPR027417 -
Vvi7g0460 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 432 IPR014001 -
Vvi7g0460 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 606 IPR001650 -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 617 631 - -
Vvi7g0460 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Vvi7g0460 771 SMART helicmild6 485 566 IPR001650 -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 18 32 - -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 40 67 - -
Vvi7g0460 771 CDD DEADc_DDX42 237 433 - -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 1 75 - -
Vvi7g0460 771 FunFam probable ATP-dependent RNA helicase DDX17 188 435 - -
Vvi7g0460 771 Pfam DEAD/DEAH box helicase 250 421 IPR011545 GO:0003676|GO:0005524
Vvi7g0460 771 MobiDBLite consensus disorder prediction 718 750 - -
Vvi7g0460 771 MobiDBLite consensus disorder prediction 611 663 - -
Vvi7g0460 771 Gene3D - 188 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0460 Vvi-Chr7 4094055 4099678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0460 224 605 Eukaryotic Initiation Factors Gene Family AT3G19760 31.688 7.75e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0460 K12835 - vvi:100241725 1449.49