Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0452 ATGGATGGTTCTGTAAAGGTTTCCAAAGAGCTGAAACATGAAACTCAGGCATCCAAAAAAAGAAGGGTGGTTCAGAAGACTGTGGTTACAGTGAGGATTGAAGCAAATGTTGGAAAACAGAAGAATGAAGGGCCGCCATCGGATTTTTGGTCTTGGAGGAAATATGGGCAAAAGCCTATAAAAGGATCTCCTTATCCAAGGGGCTATTATAGGTGCAGCACATCAAAGGGGTGCTCAGCTAAAAAGCAAGTGGAGAGATGCAGAACAGATGCTTCAATGCTTATCATTACTTACACTTCTAGTCATAACCACCCAGGCCCTGATCTCTCAACCACTCCCAACAGCCTAAACCAACCAAAAGACCCCCAAACACAGCCCATTGAAGAAACCCCCACAACCCCAAAAGAAGATCATCAACCACAACAACCCATCACCATGGCCAGTGATGAAGATGCAAGTGAAGATCATTTCCACTACTTCCAATCCACAATCAGCCATGAAGAAGACCCATTTAAAGTGAACCTAGAGAAAACCCATGATTCATTAGGTGTCGTATTTGATGAGCAGCCCCTTGCTTATCCACATCTCATGACCTTCTCAACACCCAAATCAGAAGAAAATGACTTCTTTGATGAGCTTGAAGAACTACCCACATCTTCATCTTTCACAAGCTTCATGAGGAGCGGCTTCAACTTCTTTGATGACAGGATTCTTGTGCTCCCTTCTTGA 729 0.4376 MDGSVKVSKELKHETQASKKRRVVQKTVVTVRIEANVGKQKNEGPPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSSHNHPGPDLSTTPNSLNQPKDPQTQPIEETPTTPKEDHQPQQPITMASDEDASEDHFHYFQSTISHEEDPFKVNLEKTHDSLGVVFDEQPLAYPHLMTFSTPKSEENDFFDELEELPTSSSFTSFMRSGFNFFDDRILVLPS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0452 242 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g0452 242 SMART WRKY_cls 46 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0452 242 FunFam WRKY transcription factor 65 29 107 - -
Vvi7g0452 242 SUPERFAMILY WRKY DNA-binding domain 43 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g0452 242 Gene3D WRKY domain 31 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g0452 242 MobiDBLite consensus disorder prediction 1 23 - -
Vvi7g0452 242 ProSiteProfiles WRKY domain profile. 47 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0452 242 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 222 IPR044810 GO:0003700
Vvi7g0452 242 Pfam WRKY DNA -binding domain 48 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g0452 242 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0452 Vvi-Chr7 4044420 4045687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0452 3 223 WRKY Transcription Factor Family AT4G01250 40.807 7.22e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi7g0452 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0452 - - vvi:100262306 476.863