Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0450 ATGGCGGAGGCGTTGTTCTCTTTTGAGCCGTTTGAGTTCAATGGAATTCAAGGGGGGTATGGCACTCTTGAAGGGTATGAGAAAGATAACTCCGGCAAAGGAAAACAAGACCATCTCTTTGGAATTGAAGACTGGGAAGAATTTGAATCTCTCTGTTCTCAGTACGGTCTTTTCCAAGAGAGCATTCCTGACAAAAGAGCCCATTTCTCTAAAGCTCAGCAGCAGCAGCAACAATCGCCCAGATCAAACCATTGGGCGCTTGATGAGTTACAATTCGATACTGTTTCGACACCGATTCAACCAATCCAGGAGAGCAAAAAGCTTGAAGATTTCCAAGCAGGAATCAAGGAACCTCTTCATGAACCCAACAGGGAAAAGCCATATCCATTTTCTCTGTCATCTTTGGAGCTGCTCAACAACTACGGAGGTGGTGTCAAGAAGTTGAAGAGGGAAAACTTGAGCAATATAAGCAATGAGATTAATGCGGAACGCCAGAGACTATCCACTGAAGAAGTCATGAGAGTGGCAGGAGCTCGGTATGTGGAGTTTTCAAGCCAAAGGGGTGATGATTTCACTCTCCATATGCACCCTTTCGGCTTTGCTCTCATGGGGCTGTCCCAAGAAGAAACCAAGGACGTGGAGCTTGTCCACTTCCTTCTATCTGCCGCAGAAAAGGTAGGCTGCCAACAGTTTGAACGCGCAAGCAGATTTCTCACCCGGTGTGAATGGATTGCATCAGACACAGGCAACCCAGTTGAGAGAATCGTGTTCTACTTCGCCAAAGCTCTTCGCGAGAAAATCGATCGAGAAACAGGCCACTTTAAAGGATTCAAAGGAAATGGAAGAAAGGATCTAATCGACTTGGGATTCGCCACCAACCTTGGAAATGGAAGAAAGGATCTAATCGACTTGGGATTCGCCACCAACCTTGCGTCCATTGCCTGCCACCAAGACCTTCCCTTCATCCAAGTAACACAATTCACCGGAATACAAGCGATAGTAGAACATGTCGCTTTATCTGGTAAGATCCATTTGGTCGATCTTGCAATCCGGAGCGGCGTTCAGTGGACGGTGTTGATGCAGGCCCTTGCAGACCGAGACGAATCCCCCGTTTCTCTCCTCAAGATAACTGCTGTTACAACAATGGACAAAAACCATGTGGAGGAGACCGGGAAGAGATTAGAAAGCTTCGCGAAGTCTCTCAACCTGCCATTTTCATTCAATGTCGTTTTCGTTACAGAGATGAAGGAACTGAAGGAAGAACTCTTGGCGGTAGAAGCCGAAGAAGTTGTGGCCGTGTACGCGCCCTTGGTGCTGAGATCAATGATCCCAAGGCCTGATTACCTGGACGTTCTAATGAGAGTGATTAAAAAGCTCAGCCCATCAATAATGGTGGTCACTGAAGTCGAAGCGAACCACAATTCACCTTCATTCGTGACCCGTTTCATAGAGGCACTGTTCTTCTACAGCGCATTCTTCCACTGCTTGGAGGTTTGTATGGGTAGTACTACTAAGAGCCAATACAGAATGATAACGGAGGCCATGTTTTTCGGTGAGGGGATCAGAAACATGATTGCAGCTGAGGGCGAGGAGAGGGTTGTAAGAAATGTGAAGATGGATGTATGGAGGGCCTTCTTCTCAAGGTTCGGAATGGTGGAAATGGAGTTCAGCGAGGCGTCCTTGTATCAAGCTAGCTTGATTATTAAGCGGTTTGCTTGTGGGAGTTGTTGCAGTCTTGAAAAGGATGGGAAGTGCCTCATTGTTGGGTGGAAAGGAACTCCTATTCATTCCCTTTCAGCGTGGAAATTCACCTGA 1815 0.47 MAEALFSFEPFEFNGIQGGYGTLEGYEKDNSGKGKQDHLFGIEDWEEFESLCSQYGLFQESIPDKRAHFSKAQQQQQQSPRSNHWALDELQFDTVSTPIQPIQESKKLEDFQAGIKEPLHEPNREKPYPFSLSSLELLNNYGGGVKKLKRENLSNISNEINAERQRLSTEEVMRVAGARYVEFSSQRGDDFTLHMHPFGFALMGLSQEETKDVELVHFLLSAAEKVGCQQFERASRFLTRCEWIASDTGNPVERIVFYFAKALREKIDRETGHFKGFKGNGRKDLIDLGFATNLGNGRKDLIDLGFATNLASIACHQDLPFIQVTQFTGIQAIVEHVALSGKIHLVDLAIRSGVQWTVLMQALADRDESPVSLLKITAVTTMDKNHVEETGKRLESFAKSLNLPFSFNVVFVTEMKELKEELLAVEAEEVVAVYAPLVLRSMIPRPDYLDVLMRVIKKLSPSIMVVTEVEANHNSPSFVTRFIEALFFYSAFFHCLEVCMGSTTKSQYRMITEAMFFGEGIRNMIAAEGEERVVRNVKMDVWRAFFSRFGMVEMEFSEASLYQASLIIKRFACGSCCSLEKDGKCLIVGWKGTPIHSLSAWKFT* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0450 604 Pfam GRAS domain family 215 602 IPR005202 -
Vvi7g0450 604 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 159 591 IPR005202 -
Vvi7g0450 604 Coils Coil 146 170 - -
Vvi7g0450 604 ProSiteProfiles GRAS family profile. 206 602 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0450 Vvi-Chr7 4026639 4028453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0450 205 604 GRAS Transcription Factor Family AT1G66350 29.676 3.79e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi7g0450 GRAS 6.3e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0450 - - vvi:100250283 1172.92