Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0445 ATGTCAGCGATGCAACAGCAATTGGGTTCTGCCCCCAATTGGGGTGAACCAAAAATTGCGGTGATTGATGATAGGAAGAGGAAGAGGATGCAATCGAATCGGGAATCCGCGAAGCGGTCACGGATAAGGAAGCAGCAGCATTTGGACGATCTGTTGAGCAAAGCAGCGCAGCTGCAGAAGGAGAACGGACAGATAGCGGAAAGGATCGACAAGACTACAGAGCTGTATATCAAAATTGCGTCGGACAACAATGTTTTGAATGCTCAAATTGTGGAATTGACCGACAGATTGCAGTCACTGAACTCGGTTCTTCAGATAGTGGAGGAGGTTAATGGCCTCGCCGTCGACATCCCTGAAATGCCCGATGATCTGCTGGAACCATGGCAACTCCCCTGCCCTATGCCGATAATGTACCCTGCAAACATGTTTCAGTGCTGA 438 0.4932 MSAMQQQLGSAPNWGEPKIAVIDDRKRKRMQSNRESAKRSRIRKQQHLDDLLSKAAQLQKENGQIAERIDKTTELYIKIASDNNVLNAQIVELTDRLQSLNSVLQIVEEVNGLAVDIPEMPDDLLEPWQLPCPMPIMYPANMFQC* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0445 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 15 132 - -
Vvi7g0445 145 SUPERFAMILY Leucine zipper domain 25 78 IPR046347 GO:0003700|GO:0006355
Vvi7g0445 145 Gene3D - 24 79 - -
Vvi7g0445 145 MobiDBLite consensus disorder prediction 19 46 - -
Vvi7g0445 145 Coils Coil 83 110 - -
Vvi7g0445 145 MobiDBLite consensus disorder prediction 1 46 - -
Vvi7g0445 145 CDD bZIP_plant_GBF1 26 76 IPR045314 GO:0003700|GO:0006355
Vvi7g0445 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 74 IPR004827 GO:0003700|GO:0006355
Vvi7g0445 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
Vvi7g0445 145 Pfam bZIP transcription factor 25 82 IPR004827 GO:0003700|GO:0006355
Vvi7g0445 145 Coils Coil 41 75 - -
Vvi7g0445 145 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Vvi7g0445 145 FunFam BZIP transcription factor 23 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0445 Vvi-Chr7 3987430 3987867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0445 1 145 bZIP Transcription Factor Family AT3G62420 53.061 1.83e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi7g0445 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0445 K25786 - vvi:100257331 290.041