Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0438 ATGCAGGCATTTTTAGTACTCCTGCTTCCAAGCGTGGTGATCCCATTATGGTACGATACAATTAAAAAAATAGAGCATGATGCAAAGCTGAGCTCTCAAAAGCTCCACACTGAATTGCTTTCAGAGATTAAAAGCACAGCAGAGCTGGTGCATCCAATGAATGCCTCAGCTATGAACTTGGCAAGGGTTCTAAATGCATCTGTGAGCGGAATGAAGCTTCCATTCTCCGAAATTAAGAATAGGGTGGCGCCCATGTTGTTTCAGGCACTATCCATAACTCCACATGTATCACAAATTTCTTATATTGGAATTGATGGCCTACTCTTCTCCTACTATGCTCATGGAAGCGAAATTTTTGCGCTATATTCTAATTCTTCAATTTCTGTTAATTCAAGTTCCCCGAATGCTACTGCATATACATGGTACATCCAACGGGCAGATAGTGACACAGGAAAACTGTATGGGAAAGTCATCACTTCGCCTCCGCTGGTAGTGGTTAATGCAAGCTGGTTTGAGGAAGCTATGAATAGTACCAATGGATATTCTTCTTTAGGAACTGAATGGAACAGTGTCCAAGATCTTTTCCTTAACACAGCTAAGGTGGATGGAAGAGGAGCTGTCTCTCTAGGGTTTCCAGTGAAAGAAGTAACTGATTTCTTGTCTGTTATTGATCTTCATGATGGAAGCTTATGCTTGGCTACAGAAGATAATAAAGTGCTCATAGAAGGGCTCCCAAACACACAAATAATGGTTTCTAATGATTCCATTTCTTTCAAAGTAGTAGAGAATCAAGATGGTGATCAAATAAGCCATGTTGGGAACGTCTCGTGTAAGGCCGATGATAGGACACCAAAAGCTTCTGTTTTGAATATTAGCAACAAGGATTATGTAGTTTACTGTTCGCAGCTTGAAATCATGGGAGTGAAATCGGTATATGCATTGGCTTTTCCATACAGGGGACTAGAGAGCCGTGTTCATAAGAGCAGCAGATCAGCACTCATCCTTCATATAGTAATGGTTGTCATTATGGTCATCTTGGTTTCTATGTTCATGTTCTTGCTTGTTGGAGCAGCCAGAAGAGAAATGTACTTACGTGCGAAGCTTATAAAGCAAATGGATGCTACACAGCAAGCTGAAAGGAAGAGTATGAACAAAAGTCTTGCTTTTGCGAGCGCTAGCCATGACGTGCGTGCTTCTCTAGCAGGACTTACCGGTTTGATAGACATATCTAAGGATGAAGTTGCTCCAGGCTCTGAGATAGAGACAAACTTGATACAAATGGAGGGTTGCACGAAGGACCTTTTGGGTATATTGAATTCTATTCTTGATACCAGCAAAATTGAAGCTGGTAAGATGCAACTGGAAGAGGAGGAATTCAACTTGGAAGAGCTCCTTGAAGATGTTGTTGATTTGTATCATCCTGTTGGTATGAAAAAAGGCGTAGATGTCGTGTTGGATCCTCACGATGGTTCTGTCGCTAAGTTTTCACGTGTTAAAGGCGACCGCATGAAGCTCAAACAGGTTTTGTGCAACTTACTAAGTAATGCTGTCAAATTTACTTCTGAGGGACATGTATCCATTCGAGCTTGGGCTAAGAAACCAAGTTCAGAAAGTTCGGTCCTAGCTTCTAGCCAGAAAAGCATGTTGAACCGTTTATGGAGCTTTTTTTGCAAGAATAATGAAGCATTCAAGGACCTGGAAGCCAGCAATAAAGTCCAAAAAAACCCTAATTGTATGGAGTTTGTGTTTGAGGTGGATGATACTGGTAAAGGAGTCCCCAAAGAGAAGCAGAAGTCTGTCTTTGAAAACTATGTTCAGGTCAAAGAAACAGCTCTTGGAACAGGAGGCACTGGCTTAGGCCTTGGTATTGTTCAATCTCTGGTTCGTCTAATGGGCGGAGATATTGGAATTGTTGATAAGGAAATCGGCGCAAAGGGAACTTGCTTCAGGTTCAATATTTTCCTTACAACCTGTGACACTGTTCCATCTGATCATGGAAAGGAAGAGGACATTGAAGCACAAGGGCATGCTACGTCCAGTTACTCATATCAACCTCTAGATTTGAGGATTCAAAGTACATGCAATCCGGGTTTGAATATTCTTACCTCGCCAAGGCCTAGTCCCAGGGCCGAGGGATCCCATGTGATAATCTTGATGCAAAGTGATGAAAGGAGAAGAATCACGCAAAGGTTATTTGAAACCCTAGGCATAAAAGTATCGGTACTGAAGGAATGGGAGCGGTTTTTGTATGCCCTCAAGAAGATAAGGCGAAAGGTAAGCCTTTCACATCGCAGCTCATCTGGGATATCAGAATTTAGTCCACGAAGCTTTAGATCTGGTTCCTTCAGCTCTAATGCCGGACCTAAGGATATGCCGCTAAGTGCCATGGATGGAACTGATCTGACATTGCCCACCCCAAGAAAGACCTACGCTAGAGGCACGCCGAGGTTCATCTTAATTCTGATTGAAGCCACTGCTGGGCCATTTCCTGAACTTTGCAGGGCTGTGGCTGAATTTAGAAAAGACCTTCAGAATACTTGCTGTCGCGCTGTTTGGTTAGATAAACCAACTCTCCGCAGTGTCAATTTCAGAGACGTCCCCGAGGAGATGATTTCGCCCAATGATCTAGTGATGCTGAAACCTTTTCACGGATCACGGTTGTATCAAGTGGCTAAACTCCTCCCAGAATTTGGTGGCCCAATGCTGGGCATTTCAGCCATTTCACAGGTTGGAAAAGCTGGTCCAGAACCAAGCTTATCTTCGCTTCCAACTACTAACAGGACCACGCCAAGAAAATCCCGGAGTCGAGTACGCCTGGTTAAAGAACCAGAAATACAAGAAGTTGGGACTTCAAGTAACCAAAACCCCTTGAGGGGGAAAAGGGTTTTGATTGCTGAGGATTCTATGGTGCTGTGCAAGCTGGCTACGGCCCATGTCACTCGACTCGGTGGAACAGTCGAAGCCTGTGACAACGGAGCAAAAGCTGTGGAGTTAGTTTGCAATGGTCTACGCAATAATACGAAGAACAACGCCTCCATCATTCTTCCCTACGATTACATTCTAATGGACTGCGAGATGCCAGAAATGGATGGATATGAAGCAACAAAACGCATAAGGGAGGAGGAACAGCAGTATGGCGTTCATATCCCGATCATTGCATTAACTGCTCATGCAAATGGGGAGGAAGCGAAGAGGACAATCGAGGCTGGAATGGATTATCATTTATCAAAGCCGCTTAAAAGGGAAACTCTGATGGGAGCCATTGAGTATACGAACAGCAGATGA 3285 0.4365 MQAFLVLLLPSVVIPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNLARVLNASVSGMKLPFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIFALYSNSSISVNSSSPNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNSTNGYSSLGTEWNSVQDLFLNTAKVDGRGAVSLGFPVKEVTDFLSVIDLHDGSLCLATEDNKVLIEGLPNTQIMVSNDSISFKVVENQDGDQISHVGNVSCKADDRTPKASVLNISNKDYVVYCSQLEIMGVKSVYALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFLLVGAARREMYLRAKLIKQMDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDEVAPGSEIETNLIQMEGCTKDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYHPVGMKKGVDVVLDPHDGSVAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKKPSSESSVLASSQKSMLNRLWSFFCKNNEAFKDLEASNKVQKNPNCMEFVFEVDDTGKGVPKEKQKSVFENYVQVKETALGTGGTGLGLGIVQSLVRLMGGDIGIVDKEIGAKGTCFRFNIFLTTCDTVPSDHGKEEDIEAQGHATSSYSYQPLDLRIQSTCNPGLNILTSPRPSPRAEGSHVIILMQSDERRRITQRLFETLGIKVSVLKEWERFLYALKKIRRKVSLSHRSSSGISEFSPRSFRSGSFSSNAGPKDMPLSAMDGTDLTLPTPRKTYARGTPRFILILIEATAGPFPELCRAVAEFRKDLQNTCCRAVWLDKPTLRSVNFRDVPEEMISPNDLVMLKPFHGSRLYQVAKLLPEFGGPMLGISAISQVGKAGPEPSLSSLPTTNRTTPRKSRSRVRLVKEPEIQEVGTSSNQNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNGAKAVELVCNGLRNNTKNNASIILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPIIALTAHANGEEAKRTIEAGMDYHLSKPLKRETLMGAIEYTNSR* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0438 1094 Coils Coil 447 467 - -
Vvi7g0438 1094 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 653 IPR036890 -
Vvi7g0438 1094 ProSiteProfiles Histidine kinase domain profile. 391 657 IPR005467 -
Vvi7g0438 1094 SMART HKATPase_4 500 657 IPR003594 -
Vvi7g0438 1094 MobiDBLite consensus disorder prediction 766 788 - -
Vvi7g0438 1094 MobiDBLite consensus disorder prediction 914 930 - -
Vvi7g0438 1094 Gene3D - 371 451 - -
Vvi7g0438 1094 PRINTS Bacterial sensor protein C-terminal signature 615 633 IPR004358 GO:0016310|GO:0016772
Vvi7g0438 1094 PRINTS Bacterial sensor protein C-terminal signature 581 595 IPR004358 GO:0016310|GO:0016772
Vvi7g0438 1094 PRINTS Bacterial sensor protein C-terminal signature 599 609 IPR004358 GO:0016310|GO:0016772
Vvi7g0438 1094 SMART REC_2 960 1088 IPR001789 GO:0000160
Vvi7g0438 1094 CDD REC_hyHK_CKI1_RcsC-like 962 1084 - -
Vvi7g0438 1094 Pfam Response regulator receiver domain 962 1088 IPR001789 GO:0000160
Vvi7g0438 1094 Gene3D - 940 1093 - -
Vvi7g0438 1094 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 655 IPR003594 -
Vvi7g0438 1094 SMART HisKA_10 384 450 IPR003661 GO:0000155|GO:0007165
Vvi7g0438 1094 Gene3D - 452 660 IPR036890 -
Vvi7g0438 1094 ProSiteProfiles Response regulatory domain profile. 961 1092 IPR001789 GO:0000160
Vvi7g0438 1094 MobiDBLite consensus disorder prediction 913 937 - -
Vvi7g0438 1094 MobiDBLite consensus disorder prediction 766 799 - -
Vvi7g0438 1094 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 452 IPR036097 GO:0000155|GO:0007165
Vvi7g0438 1094 PANTHER TWO-COMPONENT HISTIDINE KINASE 113 1085 - -
Vvi7g0438 1094 SUPERFAMILY CheY-like 958 1091 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0438 Vvi-Chr7 3901920 3906466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0438 3 1081 Histidine Kinase Gene Family AT2G47430 42.971 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi7g0438 HATPase_c 3.8e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0438 - - vri:117918209 2059.65