Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0436 ATGGGAGATGTTGTGTTGTTTGTGGATGATTTTGAATTGAATTCTGCAGTTCCACACTGTAGAATCTGCCATGAAGCGGAATTCGAGAGCTGTAAGACCTTGGAGGCTCCCTGTGCTTGCTCTGGAACCGTTAAGTTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGGAATATGAACCAGGCTACACAGCACCACCACCCCCCAAGAAGGCTCAGCTGGTTGATGTAGCAGTGACCATTAGGGGAAGTTTGGAAATTCCAAGAAGACGGCAGGAGCTGGAGGACCCAAGAAGAGTGGCCATGGCTGATGGCCCTGAATGCACAGCAGCTGCAGATAGAGGTGCTTCTTGCTGCAGAGTAGTGGCTCTCATTTTTACCGTCCTTTTGCTTGTGAGACATCTGTTTGCTGTGGTTACGGGCAGCACAGAAGATTATCCATTCACACTTCTAACATTACTTATACTAAGGACTAGTGGAATTATTCTCCCTATGTACATAGTCATTCGAACAATTTCAGCTATTCAAAACAGCATCCGGGAACACTATTATCAGGATTCTGAAGATGAAAGCCCAGAAGAAGTAGACGATGAAGAAGATGAGGAGCAGCCACTTCATAGTGGGGTCTGA 666 0.458 MGDVVLFVDDFELNSAVPHCRICHEAEFESCKTLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQEYEPGYTAPPPPKKAQLVDVAVTIRGSLEIPRRRQELEDPRRVAMADGPECTAAADRGASCCRVVALIFTVLLLVRHLFAVVTGSTEDYPFTLLTLLILRTSGIILPMYIVIRTISAIQNSIREHYYQDSEDESPEEVDDEEDEEQPLHSGV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0436 221 SUPERFAMILY RING/U-box 17 72 - -
Vvi7g0436 221 SMART ringv_2 19 68 IPR011016 GO:0008270
Vvi7g0436 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 76 IPR013083 -
Vvi7g0436 221 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vvi7g0436 221 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Vvi7g0436 221 Pfam Protein of unknown function (DUF3675) 73 184 IPR022143 -
Vvi7g0436 221 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vvi7g0436 221 MobiDBLite consensus disorder prediction 200 215 - -
Vvi7g0436 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 193 IPR033275 -
Vvi7g0436 221 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vvi7g0436 221 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0436 Vvi-Chr7 3881618 3883675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0436 20 143 C3H Transcription Factor Family AT2G37950 27.344 7.11e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0436 - - vri:117918534 431.024