Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0428 ATGCTTGCCAAGAAGAGCTTGGGTTCCAGACCTAGGTTAAGTGCTAATAAGTCTGTTAATCAGAAGGGTTCCATTTTTTCCAATAAAACTGTTGCTGAAGATGCTGCTGCAATTGAGACAACAAGTGTTCCTAAGTTTTCGAGTGCCAGTAGAGTTGAGCTGGTATCTCAAACTGTTAATGTAGAAGCAGCCAGACAATTGGTGACAGAAAATGTTCTGACATCTGCAGATAAAGTTGAGAATAAGAATGAATCCGTGGAGGATGAAACTGAGGCTCCAGATGATGAAAATGAGTTTGTGAGAGCAGTTAATGAGAAGTCTGAGGTGGTTGAGCTGACAAATAAAGCAGGTAAAGTGATGAAAGAAAGATCAGAACAGGTGCAGCACAGGACAAATAATACCAAGGCAAACATCTTGAACCCGCATGATGATGGAATGGGATCGCAGGAAGACAAAAATGAACCTGAGACTGAAAAGGCTGTTTGTGGCAATCCAGGTGAATCAACTATCAAATCAGATGGTGCAAAAGAGAAAATGGCTAAAGGGAACAAATCTACTTTAGGTAGAACCAAGAGAAAAACTGTTCCTGCCGTTTTGGAGACTATGGAATCTGAGAAAGATGTGGATGGGGGAGAGGCTCAAACTGAAAAGAATGTTAAGAAGGCAGAGAAGGAGAACAGAGTGCCAGATTCTGCTGGTAAAACTAGTGCCAATACTAAACCTGTGATGAAGTTGAAAAACTCCATTGAAATCGAAAAGGAGAACAAGCCAATAGGTGATGGAGATAGAAATACGAGTCAGAGAAAACAGCAAACTGGGAAATCAGCTATTGCGTCGAATAGGGCACCAGTAACGACTACTAAGAATTTTGCTAAGATTGATGCTGACTTGACGCCAGTAGAAAAGGCTTCCAACATATTGAAAACTGAGCCTGCATGGTTTATTCTGAGTGGGCATAAACTACAAAGAAAGGAGTTTCAGCAAGTTATTAAACGTTTAAAAGGAAGATCTTGCAGAGACTCTCATCACTGGTCATACCAGGCAACACACTTCATTGTTCCAGATCCAATCCGCAGGACAGAGAAGTTCTTTGCTGCTGCAGCTGCTGGGAGGTGGATCCTTAAGACAGATTATTTAACTGCTAGCAGTCAAGCAGGAAAATTCCTGGCGGAGGAGCCTTATGAATGGCACAAAAATGGCCTTAGTGAAGATGGTGCAATCAATTTAGAGGCTCCTAGGAAGTGGCGCCTCTTAAGGGAGCGGACAGGTCATGGTGCCTTCTATGGAATGCGCATTATAATTTATGGAGAATGCATTGCACCCCCTTTGGACACTCTGAAGCGTGTTGTGAAGGCAGGAGATGGGACCATATTAGCTACTTCTCCACCTTATACTCGATTCCTAAAATCAGGAGTTGATTTTGCCATTGTCAGCCCTGGAATGCCACGTGTTGATTTGTGGGTGCAGGAGTTCCTGAGACATGAGATACCCTGTGTCGTTCCTGATTATTTGGTCGAATATGTGTGCAAACCTGGATACTCTCTTGAGAGACATGTGCAATACAATACTCATGCTTGGGCAGAAAAATCATTTGCTAACCTGATAAACCGGTCAGAAGAGATTGTGGAGGACCTGGCTAATCTCACACCACCAGATAATCAAGACATTAATGATCTAAATTGTGAAGTTTGTGGATCTCATGAAAGAGGAGAAGTGATGCTGATTTGTGGTAATGAAAGCGGTTCTATTGGGTGCGGGGTTGGTACCCACATTGATTGCTGTGATCCTCCACTGACAGAGGTTCCAGAGGAGGATTGGTTCTGTCCAAAATGTCGTGGAAGCATAAATAGAATCAACCCACCTAAGAGAACCAAAAAAGGCAACTCTTTGAAGAAGTGA 1899 0.4286 MLAKKSLGSRPRLSANKSVNQKGSIFSNKTVAEDAAAIETTSVPKFSSASRVELVSQTVNVEAARQLVTENVLTSADKVENKNESVEDETEAPDDENEFVRAVNEKSEVVELTNKAGKVMKERSEQVQHRTNNTKANILNPHDDGMGSQEDKNEPETEKAVCGNPGESTIKSDGAKEKMAKGNKSTLGRTKRKTVPAVLETMESEKDVDGGEAQTEKNVKKAEKENRVPDSAGKTSANTKPVMKLKNSIEIEKENKPIGDGDRNTSQRKQQTGKSAIASNRAPVTTTKNFAKIDADLTPVEKASNILKTEPAWFILSGHKLQRKEFQQVIKRLKGRSCRDSHHWSYQATHFIVPDPIRRTEKFFAAAAAGRWILKTDYLTASSQAGKFLAEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFYGMRIIIYGECIAPPLDTLKRVVKAGDGTILATSPPYTRFLKSGVDFAIVSPGMPRVDLWVQEFLRHEIPCVVPDYLVEYVCKPGYSLERHVQYNTHAWAEKSFANLINRSEEIVEDLANLTPPDNQDINDLNCEVCGSHERGEVMLICGNESGSIGCGVGTHIDCCDPPLTEVPEEDWFCPKCRGSINRINPPKRTKKGNSLKK* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0428 632 MobiDBLite consensus disorder prediction 264 279 - -
Vvi7g0428 632 Gene3D BRCT domain 423 524 IPR036420 -
Vvi7g0428 632 SMART PHD_3 560 612 IPR001965 -
Vvi7g0428 632 Pfam PHD-finger 561 612 IPR019787 -
Vvi7g0428 632 CDD BRCT_TopBP1_rpt7 311 386 - -
Vvi7g0428 632 SUPERFAMILY BRCT domain 314 415 IPR036420 -
Vvi7g0428 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 630 IPR013083 -
Vvi7g0428 632 MobiDBLite consensus disorder prediction 246 263 - -
Vvi7g0428 632 MobiDBLite consensus disorder prediction 75 97 - -
Vvi7g0428 632 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g0428 632 SMART BRCT_7 424 511 IPR001357 -
Vvi7g0428 632 SMART BRCT_7 304 386 IPR001357 -
Vvi7g0428 632 Gene3D BRCT domain 308 422 IPR036420 -
Vvi7g0428 632 MobiDBLite consensus disorder prediction 120 279 - -
Vvi7g0428 632 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 105 626 IPR044254 -
Vvi7g0428 632 ProSiteProfiles BRCT domain profile. 314 396 IPR001357 -
Vvi7g0428 632 MobiDBLite consensus disorder prediction 196 230 - -
Vvi7g0428 632 Pfam BRCA1 C Terminus (BRCT) domain 320 381 IPR001357 -
Vvi7g0428 632 SUPERFAMILY FYVE/PHD zinc finger 548 617 IPR011011 -
Vvi7g0428 632 ProSiteProfiles Zinc finger PHD-type profile. 558 614 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0428 Vvi-Chr7 3825864 3828197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0428 244 542 Core DNA Replication Machinery Family AT4G02110 58.863 8.58e-125 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi7g0428 BRCT 2e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0428 K10728 - vvi:100257310 1278.46