Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0422 ATGGGGAGAGCGCCGTGTTGTGAGAAAGTGGGGTTGAAGAAGGGTAGGTGGACGGCTGAGGAGGATGAGGTCTTGGTGAAGTACATTCAGGCTAACGGAGAAGGCTCCTGGAGGTCCTTACCCAAGAATGCAGGGTTACTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATTAACTACTTGAGAGCAGATTTGAAGAGAGGGAACTTCTCAGAAGAAGAAGAAGAGATCATCATAAAGCTACATGCTTCTCTTGGAAATAGGTGGTCTATGATAGCTGGGCAGTTACCAGGAAGAACAGACAACGAGATAAAGAATTACTGGAACTCTCACTTGAGTAGAAAAGTTCACAGCTTCAGGAGGCTTACTAATGAGGGTCCATCAATGGTTATTGATCTAGCAAAGGTAACCACAGCCCACAAGCGCAAGGTTGGCAGAACAAGCAGATGGGCCATGAAGAAGAACAGAAGCGACAAGAGTATCCGAGAAGATGTTAACAAGAGTTCCCTAGAAAAACCCAAAGGCGATGATGATGGGAATGGAGTAATAGCAGAGAAAGAGACCCGGTCTGAAACTATGACTGGGGACCTGTATGCCCAAGTCAATGAGGAGGAAAACCCAGAACTTATGGCGAGTCATCTTCTGGGATGTGGAGGGAGAATGTTTGGTGAAGGATCTGAGACTTTTGGACCATTTCGGGTGCCGGAGGTTGAGGGGTTGTGCTTCAGTGAGAACATGGAGAGTGGAGTACTGGTGGATGGAGGTGGGCTTGTGAGTAGTGGCACTGAGGAGAGGGCAAGTGGGGCTACATGTTCCAACAAAACGACACCGTTTGGTGGGGATGTGGAGGGGAGAAACTTGAGCTCAGATAATGGAGATCAGACTGTTGACCAGTGGCCCTCCTGCTCTTCCCCAACTTCATATTTTGATGACTGGAATTGGGAAAGCAGTGCTGTAAATGGGCAAGAGCTGTGGGATGAGAAGGAGGAGATGCTGTCTTGGTTATGGGAGGACAGTGATGGTGGAGAAGTGGAGTGTGAAACCTTTGGAGGAGACCTGGACTGTGAAAAACAAAATGCTATGGTCGCTTGGCTTCTTTCTTGA 1104 0.4837 MGRAPCCEKVGLKKGRWTAEEDEVLVKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNFSEEEEEIIIKLHASLGNRWSMIAGQLPGRTDNEIKNYWNSHLSRKVHSFRRLTNEGPSMVIDLAKVTTAHKRKVGRTSRWAMKKNRSDKSIREDVNKSSLEKPKGDDDGNGVIAEKETRSETMTGDLYAQVNEEENPELMASHLLGCGGRMFGEGSETFGPFRVPEVEGLCFSENMESGVLVDGGGLVSSGTEERASGATCSNKTTPFGGDVEGRNLSSDNGDQTVDQWPSCSSPTSYFDDWNWESSAVNGQELWDEKEEMLSWLWEDSDGGEVECETFGGDLDCEKQNAMVAWLLS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0422 367 Gene3D - 13 66 - -
Vvi7g0422 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi7g0422 367 Gene3D - 68 129 - -
Vvi7g0422 367 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi7g0422 367 CDD SANT 16 61 IPR001005 -
Vvi7g0422 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi7g0422 367 FunFam Myb transcription factor 11 67 - -
Vvi7g0422 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi7g0422 367 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi7g0422 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi7g0422 367 MobiDBLite consensus disorder prediction 287 302 - -
Vvi7g0422 367 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 184 - -
Vvi7g0422 367 MobiDBLite consensus disorder prediction 151 194 - -
Vvi7g0422 367 FunFam Myb transcription factor 71 116 - -
Vvi7g0422 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi7g0422 367 MobiDBLite consensus disorder prediction 259 302 - -
Vvi7g0422 367 MobiDBLite consensus disorder prediction 263 279 - -
Vvi7g0422 367 CDD SANT 80 112 IPR001005 -
Vvi7g0422 367 SMART sant 13 63 IPR001005 -
Vvi7g0422 367 SMART sant 66 114 IPR001005 -
Vvi7g0422 367 MobiDBLite consensus disorder prediction 151 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0422 Vvi-Chr7 3730608 3732879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0422 1 367 MYB Transcription Factor Family AT2G47460 43.032 6.52e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g0422 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0422 K09422 - vvi:100260656 752.281