Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0412 ATGTCTGATTTAACAAGTATAGTGAAAGAAACTTCTGAGAATGGTACAGATCTGTCTCCAGATGATATTGGCTCCATTGAGGAAATGCCTGAGGACACAATCTTGTCGCAACAAACTTCTGTGAACCTTGTACCTTTTATTGGCCAGAGATTTGTTTCACAAGATGCTGCTTATGAATTTTATTGCAGCTTTGCAAAGCAATGTGGCTTTTCAATCAGACGCCATCGAACTCGAGGAAAAGATGGTGTAGGTAGGGGAATTACTAGAAGGGATTTTACTTGCCATCGTGGTGGCTATCCACAGCTGAAGCCATCAGATGATGGAAAGCTGCAAAGGAACCGAAAATCATCACGTTGCGGGTGTCAGGCATATATGAGAATTGTTAAAAGGGCAGATTTTGATGTCCCTGAATGGCGGATTACTGGCTTTAGCAACATCCACAACCATGAACTCTTGAAATCAAATGAGGTGCAGCTACTTCCTGCCTACTGCACCATGTCTGCTGATGACAAGAGTCGAATATGCATGTTTGCAAAAGCGGGGATGTCAGTGCGACAAATGTTAAGATTAATGGAGCTAGAGAAGGGTGTTAAGCTCGGCTGTTTACCATTCACGGAATTAGATGTGAGAAACCTGTTACAGTCCTTTAGAAATGTGGATCGAGATAATGATGCAATTGAACTTCTTAAGATGTGCAAGGATAAGAAGGATAAGGATCCCAACTTCAAATATGACTTCAAGATAGATGCCAACAATAGGTTGGAGCATATTGCCTGGTCATATGGTTCATCTATTCGATCATATGAGGCTTTTGGAGATACCATAATATTTGACACAACCCACCGTTTGGATGCATATGATATGCTTCTTGGGATTTGGATTGGAGTGGACAATCATGGAATGAACTGTTTCTTTGGTTGTGTTTTCCTACAGGATGAAAATATGCAGTCCTTTTCCTGGGCATTAAAGACATTCTTGGGTTTCATGAACGGAAAGTCTCCACAAACAATTTTAACTGACCAAAACATGTGGCTCAAAGAAGCACTTGCTATTGAAATGCCAAATACCAAACATGCTTTTTGCATTTGGCATATCATTGCAAGGTTCTCAGATTGGTTTTCTGCACCACTTGGGTCTCAATATGATAAATGGAAAGCTGAATTCCATCGGCTCTACGAGTTGTACTCAGTGGAGGATTTTGAAGTAGGATGGAGGAAGATGGTTGATACATATGGACTACATGGAAATCGACACATTGTCAGTTTATATGCATTACGTTCATTTTGGGCGCTGCCATTTTTGAGAAGTTCCTTCTTTGCTGGGATGACAAGTACATTTCAATCAGAATCTGTAACTGCTTATATCCAACGGTTTTTGAGTGCACAATCTCAGATTGATAACTTTGTAGAGCAGGTGGCTGCTATTGTTGATTTTAAAGATCAAACAGGGGCAAAACTAAAGATGCAGCAGAAGGTCCAGAAAGTCTCCCTCAAAACGGGTTCTCCTATTGAGTCCCATGCTGCTACTGTGCTTACACCATATGCCTTCTGTAAATTACAGGAGGAGCTTTTGTCAGCCCCAAAGTATGCATCTTTAATGTTAGATGAAAATTATTTCATTGTGAGACACCATACAGAAATGGATGGAGGGTGCAAAGTGCTTTGGGTCCCTCATGATGAGTTCATTAGCTGTAGTTGCCATGAGTTTGACTTTTCAGGCATCCTTTGTAGACATGTCCTTCGTGTTCTTTCAATAAACAACTGTTTTCATATTCCAGACCGATATCTACCTGCCCGCTGGCGTGATCTCTGCTCATCTATGACTAGGCCCTTCCAGGTGTCTACTTCAAGGGAACATGGAGGGAAGATCCACTTATTACAGTCCATGGTTTCAACACTTATTGCAGAATCAGTGGAGACAGAGCAACGGCTTGATGTTTCTTGTGATCAAATTTCGATGGTGTTGTCTCGTATCAAGGAATTTCCTGGACCAGCACATGGTGCTAATGATATTTCATACAATAGCCCTTCTGACTCATTGATTCTTCCAGAAGTTGAAGATTCTGATAGTATGATTCACAGTTTTAATGTGGGAAATCCTCATCATTCTATAACTCTGGGAAAGCTGAAAGAGAGAAGACATAGAGATGGGGTAGATATCTACAGGAAACGGAGACGTTGCTCTGTGCCTTGCTGTGGGCAGTTTGGACATGATGCAACTGATTGTCCAATGATAGGAGGTGATGATTTGAATGGAGATGGGTTAGGATTCTTGTAG 2277 0.4133 MSDLTSIVKETSENGTDLSPDDIGSIEEMPEDTILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAYMRIVKRADFDVPEWRITGFSNIHNHELLKSNEVQLLPAYCTMSADDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTELDVRNLLQSFRNVDRDNDAIELLKMCKDKKDKDPNFKYDFKIDANNRLEHIAWSYGSSIRSYEAFGDTIIFDTTHRLDAYDMLLGIWIGVDNHGMNCFFGCVFLQDENMQSFSWALKTFLGFMNGKSPQTILTDQNMWLKEALAIEMPNTKHAFCIWHIIARFSDWFSAPLGSQYDKWKAEFHRLYELYSVEDFEVGWRKMVDTYGLHGNRHIVSLYALRSFWALPFLRSSFFAGMTSTFQSESVTAYIQRFLSAQSQIDNFVEQVAAIVDFKDQTGAKLKMQQKVQKVSLKTGSPIESHAATVLTPYAFCKLQEELLSAPKYASLMLDENYFIVRHHTEMDGGCKVLWVPHDEFISCSCHEFDFSGILCRHVLRVLSINNCFHIPDRYLPARWRDLCSSMTRPFQVSTSREHGGKIHLLQSMVSTLIAESVETEQRLDVSCDQISMVLSRIKEFPGPAHGANDISYNSPSDSLILPEVEDSDSMIHSFNVGNPHHSITLGKLKERRHRDGVDIYRKRRRCSVPCCGQFGHDATDCPMIGGDDLNGDGLGFL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0412 758 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
Vvi7g0412 758 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Vvi7g0412 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 616 IPR031052 GO:0006355
Vvi7g0412 758 Pfam MULE transposase domain 275 367 IPR018289 -
Vvi7g0412 758 Pfam SWIM zinc finger 560 584 IPR007527 GO:0008270
Vvi7g0412 758 SMART 26again6 562 589 IPR006564 GO:0008270
Vvi7g0412 758 MobiDBLite consensus disorder prediction 1 19 - -
Vvi7g0412 758 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0412 Vvi-Chr7 3666683 3669640 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi7g0412 MULE 3.4e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0412 - - vvi:100264096 1536.16