Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0408 ATGATTACAGATTCTCAACCAAACAAGGCCGAGCAGCTCAAGAGAAGCTGTGCGGATTGCCACACCACAAGAACACCTCTATGGAGAGGCGGACCAGCTGGGCCAAGGTCGCTATGTAATGCTTGTGGGATCAGATACAGAAAACAGAGGAGCGCCCTTCTGGGGTTGGCCACAGGAAGAGGAGAAAAGAATAAGAAAAAGATTAACAGAACCAGTGGCAATAGTGAGCTTGTTTCAGTGAAGCTCAGATTGATGGCTTTGGGAAGAGATATGGTGTTGCAGAGAAGATTGGGATCTGGAAAACAGAGGAGGAAGTTGGGAGAAGAAGAAGAAGCTGCAATACTGTTGATGGCTCTCTCATCTGGTTCTGTATACGCTTAG 381 0.4724 MITDSQPNKAEQLKRSCADCHTTRTPLWRGGPAGPRSLCNACGIRYRKQRSALLGLATGRGEKNKKKINRTSGNSELVSVKLRLMALGRDMVLQRRLGSGKQRRKLGEEEEAAILLMALSSGSVYA* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0408 126 PANTHER OS01G0976800 PROTEIN 5 126 - -
Vvi7g0408 126 CDD ZnF_GATA 16 50 IPR000679 GO:0006355|GO:0043565
Vvi7g0408 126 Gene3D - 11 76 IPR013088 GO:0006355|GO:0008270
Vvi7g0408 126 SMART GATA_3 11 61 IPR000679 GO:0006355|GO:0043565
Vvi7g0408 126 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 50 - -
Vvi7g0408 126 Pfam GATA zinc finger 17 51 IPR000679 GO:0006355|GO:0043565
Vvi7g0408 126 ProSiteProfiles GATA-type zinc finger domain profile. 11 47 IPR000679 GO:0006355|GO:0043565
Vvi7g0408 126 ProSitePatterns GATA-type zinc finger domain. 17 42 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0408 Vvi-Chr7 3630011 3630491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0408 14 126 C2C2-Gata Transcription Factor Family AT3G06740 57.391 2.20e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi7g0408 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0408 - - vvi:100257206 244.973