Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0405 ATGGCTCCTGCGAAGAGCAAGGCCTCAGATCTGTCTTCCACGCCTCACCCACCTTACTTCCAAATGATTTGTGAAGCGATATCGTCATTGAAGGAACGAACGGGCTCGAGCCAGCAAGCGATTTCGAAGTTTATCGAGGAGAAATACAGCGGGACTCTTCCTCCAAATTTCAACAAACTACTTTCAGTGCAGTTGAAAAGGTTTGTGAAATCAGAAAAACTGGTCAAAGTGAAGAACTCCTTCAAAACTGCTGCCACAGAGAAGGCGAAATCATTGAAGAAGAAGACGGATGCAGTGGAAAACACCGAGAAGAATGCAGCGAAGAAGATAACGAGTAACGCAGTGAAAACGAAGCCGCTAGATGGGGTGAAGACCCCGGATATTTTGAAGAAGAAGAAGAAGGCAGAGAAAGGCGCAAAGGGATCGGCGACGGTGACGAAGAAGATGAAGCGTCTGAGTCAGGTTAAGACTCCGGAAGCAATGAAGAAGGCTCCGACTCCTGTGAAGAGGAAGACTTCCAAATCCGCAATTTCTTCAAGACCTCCACTCAGAAAAAGGTAG 561 0.4706 MAPAKSKASDLSSTPHPPYFQMICEAISSLKERTGSSQQAISKFIEEKYSGTLPPNFNKLLSVQLKRFVKSEKLVKVKNSFKTAATEKAKSLKKKTDAVENTEKNAAKKITSNAVKTKPLDGVKTPDILKKKKKAEKGAKGSATVTKKMKRLSQVKTPEAMKKAPTPVKRKTSKSAISSRPPLRKR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0405 186 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0405 186 PRINTS Histone H5 signature 108 122 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0405 186 PRINTS Histone H5 signature 141 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0405 186 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0405 186 Pfam linker histone H1 and H5 family 16 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0405 186 SUPERFAMILY "Winged helix" DNA-binding domain 12 91 IPR036390 -
Vvi7g0405 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0405 186 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0405 186 FunFam Histone H1 linker 10 99 - -
Vvi7g0405 186 CDD H15 13 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0405 186 MobiDBLite consensus disorder prediction 123 143 - -
Vvi7g0405 186 Gene3D - 12 99 IPR036388 -
Vvi7g0405 186 PANTHER HISTONE H1 6 168 - -
Vvi7g0405 186 MobiDBLite consensus disorder prediction 111 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0405 Vvi-Chr7 3625611 3626283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0405 17 82 Single Myb Histone (SMH) Gene Family AT1G72740 39.394 7.40e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0405 K11275 - vvi:100245167 349.362