Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0400 ATGTCTGTAACTGCTGCAGTTCCTCTCCAGTTCCCAGAAGGTATCAGAGTTCTTGCAGTTGATGATGATCAGACTTGTCTTCAAATAATGGGAAGAATGCTTGAGCGTTGCATGTATAAAGTTACCAAATGTAGGAATGCGGAGGAGGCACTGTCCCTGCTAAGGGAAGATAGCAGTAGGTTTGATATTGTTCTAAGTGATTTGCATATGCCTGATATTAGTGGACTTAAGCTTCTTGAGATCATTGGATTGGAGATGGACATGCCTGTTGTTATGATGTCTTCGGATGAGAAAAGGGAAACTATCATGAAGGGTATCATTCATGGTGCCTGTGACTATTGGGTTAAACCGGTTAGGATGGATGCAATTCAGCTGGTATGGCAGCATGTGATTCGGAAAAGAAGGAATGGATTGAAGGAAATGGAGCATGCAATGGAGGATGATGTAGAGGGTGGGAATGAAGAGGGCAGTAGAAGCATGAAGAGGAAAAAAGATAGGGAGGATGAAGGAGAATCCAGGAATGCTATGCCAACAACGGTAAAGAAGCCTAGGATGGTTTGGACACCAGCCCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGCTATTCTAAGGCAGTTCCAAAGAAAATCCTAGAGCAAATGAATCTTCCTGGTCTTACTAGAGAAAATGTTGCCAGCCACCTTCAGGTAATGGAAAAAATTTTCTCCAGAAAGATTTATTGTTATTGTTTGGTAAAAGACACTGATAATTACAGCTATATGGTGCAGAAATTTCGCCTTTATCTCAGCAGGGTAAGTGAGATTTCACAGGGTCCCGAAAAGACATATATGAATCCAGCTTCTTTAAATGGCTGCAACCCCCAACTTAATGTGGTTGGTGAAGTCCCACTGCAAGGTCTCACCAGGGAAGGAACCTCTAGGACTCCCATGGCTTTTGTAGATCAAAGGAACCTTTTCCACTATGGAGTGGGGCAACAAGCTTGCAATAGCAGTAAACAAGCGAAGTTGCTTCATGAAGTTCCAGCCAATATGCTGCAGCAACCTGCTCAAATGTATAGGAGCCTGGATTTTCAAGTTAGTGAAGGAACTCCAAGATCTCTAAACTTACCAGCTGCTAATGACGATAGTGTTTATGGAAGCCAGAGTAGCTTTTCTACGATGCAGATGGCTCAAACCCCATATGGCATGCCAATGCTGAATGAAATTTCAGGTCATCAGCATTTTGGGCATCACCCTTTGTCCAATCAAATTCTTTCTAATGATATTGAAGCCCAGGCTCTGAGGACAGTTGGGAATCCCATAGAAAGTAATGCTGCAGCATGCTATCCTCTAGCTTCTCCAATGGTTGATTTTTCAAAAGACCATAGCCATGGCTTCCATCTTGAGATGAATGCTATCTATGGAAATGCTTCTTCTGTTGGCCAGGGAATGGTCTCCCTTGGTGAAGAATATGGATATAGGAACCCGGAAAATATTGCTCAACCTGGAAACAACCTCTTGGTTGATGATTCTTTTAGGATGAAGCCTGAAAGTATGCCTAGGCCGGGCTGTAAGTCTTTATCTTTTGGCCAACACTTTGACCACGGATTCATGTCCTGA 1605 0.4324 MSVTAAVPLQFPEGIRVLAVDDDQTCLQIMGRMLERCMYKVTKCRNAEEALSLLREDSSRFDIVLSDLHMPDISGLKLLEIIGLEMDMPVVMMSSDEKRETIMKGIIHGACDYWVKPVRMDAIQLVWQHVIRKRRNGLKEMEHAMEDDVEGGNEEGSRSMKRKKDREDEGESRNAMPTTVKKPRMVWTPALHQQFVAAVNQLGYSKAVPKKILEQMNLPGLTRENVASHLQVMEKIFSRKIYCYCLVKDTDNYSYMVQKFRLYLSRVSEISQGPEKTYMNPASLNGCNPQLNVVGEVPLQGLTREGTSRTPMAFVDQRNLFHYGVGQQACNSSKQAKLLHEVPANMLQQPAQMYRSLDFQVSEGTPRSLNLPAANDDSVYGSQSSFSTMQMAQTPYGMPMLNEISGHQHFGHHPLSNQILSNDIEAQALRTVGNPIESNAAACYPLASPMVDFSKDHSHGFHLEMNAIYGNASSVGQGMVSLGEEYGYRNPENIAQPGNNLLVDDSFRMKPESMPRPGCKSLSFGQHFDHGFMS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0400 534 SUPERFAMILY CheY-like 13 135 IPR011006 -
Vvi7g0400 534 Pfam Myb-like DNA-binding domain 184 231 IPR001005 -
Vvi7g0400 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 241 IPR017930 -
Vvi7g0400 534 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Vvi7g0400 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 340 IPR045279 GO:0009736
Vvi7g0400 534 MobiDBLite consensus disorder prediction 143 177 - -
Vvi7g0400 534 Gene3D - 178 239 - -
Vvi7g0400 534 Gene3D - 14 148 - -
Vvi7g0400 534 MobiDBLite consensus disorder prediction 143 175 - -
Vvi7g0400 534 FunFam Two-component response regulator 178 239 - -
Vvi7g0400 534 SUPERFAMILY Homeodomain-like 179 233 IPR009057 -
Vvi7g0400 534 SMART REC_2 15 127 IPR001789 GO:0000160
Vvi7g0400 534 Pfam Response regulator receiver domain 17 123 IPR001789 GO:0000160
Vvi7g0400 534 CDD REC_typeB_ARR-like 17 131 - -
Vvi7g0400 534 NCBIfam myb-like DNA-binding domain, SHAQKYF class 182 233 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0400 Vvi-Chr7 3581296 3584264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0400 11 220 Response Regulator Gene Family AT4G16110 52.137 2.94e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi7g0400 Response_reg 2.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0400 - K14491 ming:122082399 374.015