Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0399 ATGGCCACGATGAATCGAACCGTAGTGTTCAGAAAGCACAGAGATGCTGTGAACAGCGTTCGAGCTCCGGCGGGGGTCAGCTCCGGCGGTGCCGTGATCGAAATGGCGAGTACTTCGCTTTTTCACTCGAATCGGTCTTCGTATACTCCTCTTAGCACTGAGGATCCAGGTCCTTCTAGTAAGGATGCATTTACAGTGGGTCTACCTCCAGCTTGGGTAGATGTTTCTGAAGAAGTAGCTGCAAATATACAACGTTCTAGGGTAAAAATGGCTGAGTTAGTCAAGGCTCAGGCCAAAGCTTTAATGCCCTCCTTTGAAGATGGCAAAGAAGATCAACGTAAGATTGAGTCTCTCACCCAAGAAATTACAGATCTACTGAAGAGGTCAGAAAAGAGATTACAAAAACTTTCTGCAAGGGGGCCTTCTGAGGATTCTAATGTTAGGAAAAATGTACAGCGTTCTCTTGCTACAGACCTTCAGAACCTCTCATTGGAGCTCAGAAAGAGACAGTCAACATATTTGAAGCGTTTGAGGCAGCAAAAAGAGGGACATGACGGGGTTGACTTGGAGATGAACTTGAATGAAAATAAATTCAGATTGGATGATGATGAGTTTGGTGACATGGGTTTTAATGAGCATCAAATGGCCAAGCTAAAGAAGAGTGAGAAATTCACAGCTGAAAGGGAGAAAGAGATCAGACAGGTGGTGGAATCTGTGAATGAGCTTGCTCAAATCATGAAAGATCTCTCAGTCCTTGTGATAGACCAGGGAACAATTGTTGATCGGATAGACTACAACATTCAGAGTGTGTCTGCATCAGTTGAGGAGGGCTTTAAACAGCTTGAAAAGGCAGAAAGAACACAGAGGAAAGGTGGAATGGTAACATGTGCAACGATTCTCGTTATCATGTGTTTCATCATGCTAGTCCTCCTAATCTTGAAGGAGATTTTCTTGTGA 957 0.4399 MATMNRTVVFRKHRDAVNSVRAPAGVSSGGAVIEMASTSLFHSNRSSYTPLSTEDPGPSSKDAFTVGLPPAWVDVSEEVAANIQRSRVKMAELVKAQAKALMPSFEDGKEDQRKIESLTQEITDLLKRSEKRLQKLSARGPSEDSNVRKNVQRSLATDLQNLSLELRKRQSTYLKRLRQQKEGHDGVDLEMNLNENKFRLDDDEFGDMGFNEHQMAKLKKSEKFTAEREKEIRQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSASVEEGFKQLEKAERTQRKGGMVTCATILVIMCFIMLVLLILKEIFL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0399 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 222 284 IPR000727 -
Vvi7g0399 318 CDD SNARE_syntaxin16 226 283 - -
Vvi7g0399 318 ProSitePatterns Syntaxin / epimorphin family signature. 228 267 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi7g0399 318 Gene3D - 69 276 - -
Vvi7g0399 318 SMART SynN_4 63 178 IPR006011 GO:0016020
Vvi7g0399 318 FunFam Syntaxin-43 69 276 - -
Vvi7g0399 318 Coils Coil 108 139 - -
Vvi7g0399 318 PANTHER SYNTAXIN 76 304 IPR045242 -
Vvi7g0399 318 SUPERFAMILY t-snare proteins 68 277 IPR010989 GO:0016020|GO:0016192
Vvi7g0399 318 SMART tSNARE_6 217 284 IPR000727 -
Vvi7g0399 318 Pfam SNARE domain 258 310 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0399 Vvi-Chr7 3575994 3579469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0399 1 318 SNARE and Associated Proteins AT5G26980 74.540 1.94e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0399 K08489 - vvi:100248594 610.912